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iSEE · Oct 7, 2024 · f04b6fb · f04b6fb
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-3227046c
+4c130a4f
diff --git a/about.html b/about.html
@@ -475,8 +475,6 @@ <h2 class="anchored" data-anchor-id="a-bit-of-history">A bit of history</h2>
       if (!isInternal(link.href)) {
           // target, if specified
           link.setAttribute("target", "_blank");
-          // default icon
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 });

diff --git a/apps.html b/apps.html
@@ -692,8 +692,6 @@ <h2 class="anchored" data-anchor-id="demonstration-isee-apps-2018">Demonstration
       if (!isInternal(link.href)) {
           // target, if specified
           link.setAttribute("target", "_blank");
-          // default icon
-          link.classList.add("external");
       }
     }
 });

diff --git a/dashboard.html b/dashboard.html
@@ -499,8 +499,6 @@ <h2 class="anchored" data-anchor-id="third-party-extensions">Third-party extensi
       if (!isInternal(link.href)) {
           // target, if specified
           link.setAttribute("target", "_blank");
-          // default icon
-          link.classList.add("external");
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 });

diff --git a/images/third-party/GitHub_Logo.png b/images/third-party/GitHub_Logo.png
diff --git a/index.html b/index.html
@@ -404,8 +404,6 @@ <h1 class="title">Welcome to the iSEE-verse!</h1>
       if (!isInternal(link.href)) {
           // target, if specified
           link.setAttribute("target", "_blank");
-          // default icon
-          link.classList.add("external");
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diff --git a/panels.html b/panels.html
@@ -553,8 +553,6 @@ <h3 class="anchored" data-anchor-id="volcanoplot">VolcanoPlot</h3>
       if (!isInternal(link.href)) {
           // target, if specified
           link.setAttribute("target", "_blank");
-          // default icon
-          link.classList.add("external");
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diff --git a/resources.html b/resources.html
@@ -141,7 +141,7 @@ <h2 id="toc-title">On this page</h2>
   <ul>
   <li><a href="#github-organisation" id="toc-github-organisation" class="nav-link active" data-scroll-target="#github-organisation">GitHub organisation</a></li>
   <li><a href="#bioconductor-pages" id="toc-bioconductor-pages" class="nav-link" data-scroll-target="#bioconductor-pages">Bioconductor pages</a></li>
-  <li><a href="#online-documentation-pkgdown" id="toc-online-documentation-pkgdown" class="nav-link" data-scroll-target="#online-documentation-pkgdown">Online documentation (pkgdown)</a></li>
+  <li><a href="#pkgdown-websites" id="toc-pkgdown-websites" class="nav-link" data-scroll-target="#pkgdown-websites">pkgdown websites</a></li>
   <li><a href="#workshops" id="toc-workshops" class="nav-link" data-scroll-target="#workshops">Workshops</a>
   <ul class="collapse">
   <li><a href="#iuseisee" id="toc-iuseisee" class="nav-link" data-scroll-target="#iuseisee">iUSEiSEE</a></li>
@@ -187,6 +187,12 @@ <h2 class="anchored" data-anchor-id="github-organisation">GitHub organisation</h
 </section>
 <section id="bioconductor-pages" class="level2">
 <h2 class="anchored" data-anchor-id="bioconductor-pages">Bioconductor pages</h2>
+<div class="quarto-figure quarto-figure-center">
+<figure class="figure">
+<p><img src="https://bioconductor.org/images/logo/png/bioconductor_logo_cmyk.png" height="100" class="figure-img"></p>
+<figcaption class="figure-caption">Bioconductor logo</figcaption>
+</figure>
+</div>
 <p>The links below redirect to the web page for each package on the Bioconductor website.</p>
 <p>Each page contains information and links to further resources for the latest version of each package available from Bioconductor.</p>
 <div class="callout callout-style-default callout-note callout-titled">
@@ -202,18 +208,44 @@ <h2 class="anchored" data-anchor-id="bioconductor-pages">Bioconductor pages</h2>
 <p>The links below redirect either to the latest version of each package on the <em>release</em> branch if available, or the latest version on the <em>development</em> branch for recent package that have are not distributed on a <em>release</em> branch yet. For more information, see <a href="https://www.bioconductor.org/install/">Using Bioconductor</a>.</p>
 </div>
 </div>
-<ul>
-<li><a href="https://bioconductor.org/packages/iSEE/" class="uri">https://bioconductor.org/packages/iSEE/</a></li>
-<li><a href="https://bioconductor.org/packages/iSEEde/" class="uri">https://bioconductor.org/packages/iSEEde/</a></li>
-<li><a href="https://bioconductor.org/packages/iSEEhex/" class="uri">https://bioconductor.org/packages/iSEEhex/</a></li>
-<li><a href="https://bioconductor.org/packages/iSEEhub/" class="uri">https://bioconductor.org/packages/iSEEhub/</a></li>
-<li><a href="https://bioconductor.org/packages/iSEEindex/" class="uri">https://bioconductor.org/packages/iSEEindex/</a></li>
-<li><a href="https://bioconductor.org/packages/iSEEpathways/" class="uri">https://bioconductor.org/packages/iSEEpathways/</a></li>
-<li><a href="https://bioconductor.org/packages/iSEEu/" class="uri">https://bioconductor.org/packages/iSEEu/</a></li>
-</ul>
+<div class="quarto-layout-panel">
+<div class="quarto-layout-row quarto-layout-valign-top">
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://bioconductor.org/packages/iSEE/">iSEE</a></p>
+</div>
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://bioconductor.org/packages/iSEEde/">iSEEde</a></p>
+</div>
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://bioconductor.org/packages/iSEEhex/">iSEEhex</a></p>
+</div>
+</div>
+<div class="quarto-layout-row quarto-layout-valign-top">
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://bioconductor.org/packages/iSEEhub/">iSEEhub</a></p>
+</div>
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://bioconductor.org/packages/iSEEindex/">iSEEindex</a></p>
+</div>
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://bioconductor.org/packages/iSEEpathways/">iSEEpathways</a></p>
+</div>
+</div>
+<div class="quarto-layout-row quarto-layout-valign-top">
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://bioconductor.org/packages/iSEEu/">iSEEu</a></p>
+</div>
+</div>
+</div>
 </section>
-<section id="online-documentation-pkgdown" class="level2">
-<h2 class="anchored" data-anchor-id="online-documentation-pkgdown">Online documentation (pkgdown)</h2>
+<section id="pkgdown-websites" class="level2">
+<h2 class="anchored" data-anchor-id="pkgdown-websites">pkgdown websites</h2>
+<div class="quarto-figure quarto-figure-center">
+<figure class="figure">
+<p><img src="images/third-party/GitHub_Logo.png" height="100" class="figure-img"></p>
+<figcaption class="figure-caption">GitHub logo</figcaption>
+</figure>
+</div>
 <p>The links below redirect to help pages and vignettes for the latest version of each package pushed to GitHub.</p>
 <div class="callout callout-style-default callout-note callout-titled">
 <div class="callout-header d-flex align-content-center">
@@ -228,15 +260,35 @@ <h2 class="anchored" data-anchor-id="online-documentation-pkgdown">Online docume
 <p>The latest version pushed to GitHub may be <em>ahead</em> of the latest version available on Bioconductor.</p>
 </div>
 </div>
-<ul>
-<li><a href="https://isee.github.io/iSEE" class="uri">https://isee.github.io/iSEE</a></li>
-<li><a href="https://isee.github.io/iSEEde/" class="uri">https://isee.github.io/iSEEde/</a></li>
-<li><a href="https://isee.github.io/iSEEhex/" class="uri">https://isee.github.io/iSEEhex/</a></li>
-<li><a href="https://isee.github.io/iSEEhub/" class="uri">https://isee.github.io/iSEEhub/</a></li>
-<li><a href="https://isee.github.io/iSEEindex/" class="uri">https://isee.github.io/iSEEindex/</a></li>
-<li><a href="https://isee.github.io/iSEEpathways/" class="uri">https://isee.github.io/iSEEpathways/</a></li>
-<li><a href="https://isee.github.io/iSEEu/" class="uri">https://isee.github.io/iSEEu/</a></li>
-</ul>
+<div class="quarto-layout-panel">
+<div class="quarto-layout-row quarto-layout-valign-top">
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://isee.github.io/iSEE/">iSEE</a></p>
+</div>
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://isee.github.io/iSEEde/">iSEEde</a></p>
+</div>
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://isee.github.io/iSEEhex/">iSEEhex</a></p>
+</div>
+</div>
+<div class="quarto-layout-row quarto-layout-valign-top">
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://isee.github.io/iSEEhub/">iSEEhub</a></p>
+</div>
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://isee.github.io/iSEEindex/">iSEEindex</a></p>
+</div>
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://isee.github.io/iSEEpathways/">iSEEpathways</a></p>
+</div>
+</div>
+<div class="quarto-layout-row quarto-layout-valign-top">
+<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
+<p><a href="https://isee.github.io/iSEEu/">iSEEu</a></p>
+</div>
+</div>
+</div>
 </section>
 <section id="workshops" class="level2">
 <h2 class="anchored" data-anchor-id="workshops">Workshops</h2>
@@ -556,8 +608,6 @@ <h2 class="anchored" data-anchor-id="videos">Videos</h2>
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           // target, if specified
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-          // default icon
-          link.classList.add("external");
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 });

diff --git a/search.json b/search.json
@@ -256,14 +256,14 @@
     "href": "resources.html#bioconductor-pages",
     "title": "Resources",
     "section": "Bioconductor pages",
-    "text": "Bioconductor pages\nThe links below redirect to the web page for each package on the Bioconductor website.\nEach page contains information and links to further resources for the latest version of each package available from Bioconductor.\n\n\n\n\n\n\nNote\n\n\n\nThe links below redirect either to the latest version of each package on the release branch if available, or the latest version on the development branch for recent package that have are not distributed on a release branch yet. For more information, see Using Bioconductor.\n\n\n\nhttps://bioconductor.org/packages/iSEE/\nhttps://bioconductor.org/packages/iSEEde/\nhttps://bioconductor.org/packages/iSEEhex/\nhttps://bioconductor.org/packages/iSEEhub/\nhttps://bioconductor.org/packages/iSEEindex/\nhttps://bioconductor.org/packages/iSEEpathways/\nhttps://bioconductor.org/packages/iSEEu/"
+    "text": "Bioconductor pages\n\n\n\nBioconductor logo\n\n\nThe links below redirect to the web page for each package on the Bioconductor website.\nEach page contains information and links to further resources for the latest version of each package available from Bioconductor.\n\n\n\n\n\n\nNote\n\n\n\nThe links below redirect either to the latest version of each package on the release branch if available, or the latest version on the development branch for recent package that have are not distributed on a release branch yet. For more information, see Using Bioconductor.\n\n\n\n\n\niSEE\n\n\niSEEde\n\n\niSEEhex\n\n\n\n\niSEEhub\n\n\niSEEindex\n\n\niSEEpathways\n\n\n\n\niSEEu"
   },
   {
-    "objectID": "resources.html#online-documentation-pkgdown",
-    "href": "resources.html#online-documentation-pkgdown",
+    "objectID": "resources.html#pkgdown-websites",
+    "href": "resources.html#pkgdown-websites",
     "title": "Resources",
-    "section": "Online documentation (pkgdown)",
-    "text": "Online documentation (pkgdown)\nThe links below redirect to help pages and vignettes for the latest version of each package pushed to GitHub.\n\n\n\n\n\n\nNote\n\n\n\nThe latest version pushed to GitHub may be ahead of the latest version available on Bioconductor.\n\n\n\nhttps://isee.github.io/iSEE\nhttps://isee.github.io/iSEEde/\nhttps://isee.github.io/iSEEhex/\nhttps://isee.github.io/iSEEhub/\nhttps://isee.github.io/iSEEindex/\nhttps://isee.github.io/iSEEpathways/\nhttps://isee.github.io/iSEEu/"
+    "section": "pkgdown websites",
+    "text": "pkgdown websites\n\n\n\nGitHub logo\n\n\nThe links below redirect to help pages and vignettes for the latest version of each package pushed to GitHub.\n\n\n\n\n\n\nNote\n\n\n\nThe latest version pushed to GitHub may be ahead of the latest version available on Bioconductor.\n\n\n\n\n\niSEE\n\n\niSEEde\n\n\niSEEhex\n\n\n\n\niSEEhub\n\n\niSEEindex\n\n\niSEEpathways\n\n\n\n\niSEEu"
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diff --git a/sitemap.xml b/sitemap.xml
@@ -2,30 +2,30 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
   <url>
     <loc>https://iSEE.github.io/videos.html</loc>
-    <lastmod>2024-09-30T08:02:48.663Z</lastmod>
+    <lastmod>2024-10-07T09:48:23.983Z</lastmod>
   </url>
   <url>
     <loc>https://iSEE.github.io/about.html</loc>
-    <lastmod>2024-09-30T08:02:47.459Z</lastmod>
+    <lastmod>2024-10-07T09:48:22.801Z</lastmod>
   </url>
   <url>
     <loc>https://iSEE.github.io/index.html</loc>
-    <lastmod>2024-09-30T08:02:46.108Z</lastmod>
+    <lastmod>2024-10-07T09:48:21.395Z</lastmod>
   </url>
   <url>
     <loc>https://iSEE.github.io/panels.html</loc>
-    <lastmod>2024-09-30T08:02:44.827Z</lastmod>
+    <lastmod>2024-10-07T09:48:20.294Z</lastmod>
   </url>
   <url>
     <loc>https://iSEE.github.io/dashboard.html</loc>
-    <lastmod>2024-09-30T08:02:45.581Z</lastmod>
+    <lastmod>2024-10-07T09:48:20.898Z</lastmod>
   </url>
   <url>
     <loc>https://iSEE.github.io/apps.html</loc>
-    <lastmod>2024-09-30T08:02:46.901Z</lastmod>
+    <lastmod>2024-10-07T09:48:22.174Z</lastmod>
   </url>
   <url>
     <loc>https://iSEE.github.io/resources.html</loc>
-    <lastmod>2024-09-30T08:02:48.150Z</lastmod>
+    <lastmod>2024-10-07T09:48:23.475Z</lastmod>
   </url>
 </urlset>
diff --git a/videos.html b/videos.html
@@ -438,8 +438,6 @@ <h2 class="anchored" data-anchor-id="featured-playlists">Featured playlists</h2>
       if (!isInternal(link.href)) {
           // target, if specified
           link.setAttribute("target", "_blank");
-          // default icon
-          link.classList.add("external");
       }
     }
 });