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install.html

@@ -201,12 +201,12 @@ <h1 class="title">Installation</h1>
 
 <section id="install-fa-brands-r-project" class="level2">
 <h2 class="anchored" data-anchor-id="install-fa-brands-r-project">Install <i class="fa-brands fa-r-project" aria-label="r-project"></i></h2>
-<p><em>iSEE</em> requires Bioconductor 3.7+ which in turn requires R 3.5+. Choose a version of R that matches your computer’s operating system. We recommend using the latest version of R and Bioconductor to access the latest version of <em>iSEE</em>.</p>
+<p><em>iSEE</em> requires Bioconductor 3.7+ which in turn requires R 3.5+. Choose a version of R that matches your computer’s operating system. We recommend using the latest version of R to access the latest version of <em>iSEE</em>.</p>
 <p><a href="https://cran.rstudio.com/">Download and install R</a></p>
 </section>
 <section id="install-isee" class="level2">
 <h2 class="anchored" data-anchor-id="install-isee">Install iSEE</h2>
-<p>We recommend installing <em>iSEE</em> from the Bioconductor repository. The Bioconductor installation process will install the appropriate version of <em>iSEE</em> for your version of R.</p>
+<p>We recommend installing the latest stable version of <em>iSEE</em> from the Bioconductor repository.</p>
 <p><a href="https://bioconductor.org/packages/iSEE/">Install iSEE from Bioconductor</a></p>
 <div class="callout callout-style-default callout-note callout-titled">
 <div class="callout-header d-flex align-content-center">
@@ -227,6 +227,19 @@ <h2 class="anchored" data-anchor-id="install-the-isee-verse">Install the iSEE-ve
 <p>Most users do not need the full collection of packages that provide extensions to <em>iSEE</em>.</p>
 <p>For the aficionados, the command below does just that; it combines all the known <em>iSEE</em> extension packages into a single command that installs them all in one go.</p>
 <p>Great for copy-pasting, and for our <a href="https://bioconductor.org/packages/stats/bioc/iSEE/">download statistics</a>!</p>
+<div class="callout callout-style-default callout-note callout-titled">
+<div class="callout-header d-flex align-content-center">
+<div class="callout-icon-container">
+<i class="callout-icon"></i>
+</div>
+<div class="callout-title-container flex-fill">
+Note
+</div>
+</div>
+<div class="callout-body-container callout-body">
+<p>The code below assumes you have already installed the package <a href="https://bioconductor.org/packages/BiocManager/"><em>BiocManager</em></a>, which will be the case if you have already installed <em>iSEE</em> or any other package from the Bioconductor repository.</p>
+</div>
+</div>
 <div class="cell">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a>BiocManager<span class="sc">::</span><span class="fu">install</span>(<span class="fu">c</span>(</span>
 <span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>    <span class="st">"iSEEde"</span>,</span>

search.json

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-    "text": "iSEE requires Bioconductor 3.7+ which in turn requires R 3.5+. Choose a version of R that matches your computer’s operating system. We recommend using the latest version of R and Bioconductor to access the latest version of iSEE.\nDownload and install R"
+    "text": "iSEE requires Bioconductor 3.7+ which in turn requires R 3.5+. Choose a version of R that matches your computer’s operating system. We recommend using the latest version of R to access the latest version of iSEE.\nDownload and install R"
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-    "text": "iSEE requires Bioconductor 3.7+ which in turn requires R 3.5+. Choose a version of R that matches your computer’s operating system. We recommend using the latest version of R and Bioconductor to access the latest version of iSEE.\nDownload and install R"
+    "text": "iSEE requires Bioconductor 3.7+ which in turn requires R 3.5+. Choose a version of R that matches your computer’s operating system. We recommend using the latest version of R to access the latest version of iSEE.\nDownload and install R"
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-    "text": "Install iSEE\nWe recommend installing iSEE from the Bioconductor repository. The Bioconductor installation process will install the appropriate version of iSEE for your version of R.\nInstall iSEE from Bioconductor\n\n\n\n\n\n\nNote\n\n\n\nFollow the link above and scroll down to the section Installation."
+    "text": "Install iSEE\nWe recommend installing the latest stable version of iSEE from the Bioconductor repository.\nInstall iSEE from Bioconductor\n\n\n\n\n\n\nNote\n\n\n\nFollow the link above and scroll down to the section Installation."
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     "title": "Installation",
     "section": "Install the iSEE-verse",
-    "text": "Install the iSEE-verse\nMost users do not need the full collection of packages that provide extensions to iSEE.\nFor the aficionados, the command below does just that; it combines all the known iSEE extension packages into a single command that installs them all in one go.\nGreat for copy-pasting, and for our download statistics!\n\nBiocManager::install(c(\n    \"iSEEde\",\n    \"iSEEhex\",\n    \"iSEEhub\",\n    \"iSEEindex\",\n    \"iSEEpathways\",\n    \"iSEEtree\",\n    \"iSEEu\"\n))"
+    "text": "Install the iSEE-verse\nMost users do not need the full collection of packages that provide extensions to iSEE.\nFor the aficionados, the command below does just that; it combines all the known iSEE extension packages into a single command that installs them all in one go.\nGreat for copy-pasting, and for our download statistics!\n\n\n\n\n\n\nNote\n\n\n\nThe code below assumes you have already installed the package BiocManager, which will be the case if you have already installed iSEE or any other package from the Bioconductor repository.\n\n\n\nBiocManager::install(c(\n    \"iSEEde\",\n    \"iSEEhex\",\n    \"iSEEhub\",\n    \"iSEEindex\",\n    \"iSEEpathways\",\n    \"iSEEtree\",\n    \"iSEEu\"\n))"
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     <loc>https://isee.github.io/dashboard.html</loc>
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     <loc>https://isee.github.io/panels.html</loc>
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   <url>
     <loc>https://isee.github.io/index.html</loc>
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