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2 changes: 1 addition & 1 deletion .nojekyll
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36 changes: 18 additions & 18 deletions apps.html
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<h2 id="toc-title">On this page</h2>

<ul>
<li><a href="#billing-et-al.-circulation-2023" id="toc-billing-et-al.-circulation-2023" class="nav-link active" data-scroll-target="#billing-et-al.-circulation-2023">Billing et al., Circulation, 2023</a></li>
<li><a href="#rigby-et-al.-biorxiv-2023" id="toc-rigby-et-al.-biorxiv-2023" class="nav-link" data-scroll-target="#rigby-et-al.-biorxiv-2023">Rigby et al., bioRxiv, 2023</a></li>
<li><a href="#rigby-et-al.-biorxiv-2023" id="toc-rigby-et-al.-biorxiv-2023" class="nav-link active" data-scroll-target="#rigby-et-al.-biorxiv-2023">Rigby et al., bioRxiv, 2023</a></li>
<li><a href="#fgcz-fancy-single-cell-explorer" id="toc-fgcz-fancy-single-cell-explorer" class="nav-link" data-scroll-target="#fgcz-fancy-single-cell-explorer">FGCZ Fancy Single Cell Explorer</a></li>
<li><a href="#moffitt-et-al.-science-2018" id="toc-moffitt-et-al.-science-2018" class="nav-link" data-scroll-target="#moffitt-et-al.-science-2018">Moffitt et al., Science, 2018</a></li>
<li><a href="#petukhov-et-al.-nat-biotech-2021" id="toc-petukhov-et-al.-nat-biotech-2021" class="nav-link" data-scroll-target="#petukhov-et-al.-nat-biotech-2021">Petukhov et al., Nat Biotech, 2021</a></li>
<li><a href="#kim-et-al-jneurosci-2023" id="toc-kim-et-al-jneurosci-2023" class="nav-link" data-scroll-target="#kim-et-al-jneurosci-2023">Kim et al, JNeurosci, 2023</a></li>
<li><a href="#kwon-et-al.-biorxiv-2023" id="toc-kwon-et-al.-biorxiv-2023" class="nav-link" data-scroll-target="#kwon-et-al.-biorxiv-2023">Kwon et al., bioRxiv, 2023</a></li>
<li><a href="#isee-covid-hub" id="toc-isee-covid-hub" class="nav-link" data-scroll-target="#isee-covid-hub">iSEE COVID Hub</a></li>
<li><a href="#billing-et-al.-circulation-2023" id="toc-billing-et-al.-circulation-2023" class="nav-link" data-scroll-target="#billing-et-al.-circulation-2023">Billing et al., Circulation, 2023</a></li>
<li><a href="#kalucka-et-al.-cell-2020" id="toc-kalucka-et-al.-cell-2020" class="nav-link" data-scroll-target="#kalucka-et-al.-cell-2020">Kalucka et al., Cell, 2020</a></li>
<li><a href="#brulois-et-al.-nat-commun-2020" id="toc-brulois-et-al.-nat-commun-2020" class="nav-link" data-scroll-target="#brulois-et-al.-nat-commun-2020">Brulois et al., Nat Commun, 2020</a></li>
<li><a href="#myocyte-data-sets" id="toc-myocyte-data-sets" class="nav-link" data-scroll-target="#myocyte-data-sets">Myocyte data sets</a></li>
Expand Down Expand Up @@ -179,22 +179,6 @@ <h1 class="title">Apps</h1>

<p>This page lists known public deployments of <a href="https://bioconductor.org/packages/iSEE/">iSEE</a> apps.</p>
<p>Links are ordered in reverse order of <a href="https://bioconductor.org/packages/iSEE/">iSEE</a> package version (i.e., those using the most recent version appear first).</p>
<section id="billing-et-al.-circulation-2023" class="level2">
<h2 class="anchored" data-anchor-id="billing-et-al.-circulation-2023">Billing et al., Circulation, 2023</h2>
<div class="quarto-figure quarto-figure-center">
<figure class="figure">
<p><img src="images/apps/sglt2i_proteome.png" class="img-fluid figure-img"></p>
<figcaption class="figure-caption">Billing et al., Circulation, 2023</figcaption>
</figure>
</div>
<ul>
<li><strong>URL (proteome):</strong> <a href="https://kidneyapp.shinyapps.io/SGLT2i_proteome/" class="uri">https://kidneyapp.shinyapps.io/SGLT2i_proteome/</a></li>
<li><strong>URL (phosphoproteome):</strong> <a href="https://kidneyapp.shinyapps.io/SGLT2i_phosphoproteome/" class="uri">https://kidneyapp.shinyapps.io/SGLT2i_phosphoproteome/</a></li>
<li><strong>Maintainer:</strong> Vallon and Rinschen labs (La Jolla/Aarhus)</li>
<li><strong>Version:</strong> iSEE {2.8.0}, iSEEu {1.8.0}</li>
</ul>
<p><strong>More:</strong> A set of proteomic and phosphoproteomic datasets containing measurements for 5 organs (kidney, liver, heart, skeletal muscle, white adipose tissue (WAT)) of 2 mouse strains. Accompanies the publication <a href="https://www.ahajournals.org/doi/full/10.1161/CIRCULATIONAHA.123.065517">Metabolic Communication by SGLT2 Inhibition</a>.</p>
</section>
<section id="rigby-et-al.-biorxiv-2023" class="level2">
<h2 class="anchored" data-anchor-id="rigby-et-al.-biorxiv-2023">Rigby et al., bioRxiv, 2023</h2>
<div class="quarto-figure quarto-figure-center">
Expand Down Expand Up @@ -304,6 +288,22 @@ <h2 class="anchored" data-anchor-id="isee-covid-hub">iSEE COVID Hub</h2>
</ul>
<p><strong>More:</strong> Those apps are listed at <a href="http://shiny.imbei.uni-mainz.de:3838/iSEE_covidIT/" class="uri">http://shiny.imbei.uni-mainz.de:3838/iSEE_covidIT/</a>.</p>
</section>
<section id="billing-et-al.-circulation-2023" class="level2">
<h2 class="anchored" data-anchor-id="billing-et-al.-circulation-2023">Billing et al., Circulation, 2023</h2>
<div class="quarto-figure quarto-figure-center">
<figure class="figure">
<p><img src="images/apps/sglt2i_proteome.png" class="img-fluid figure-img"></p>
<figcaption class="figure-caption">Billing et al., Circulation, 2023</figcaption>
</figure>
</div>
<ul>
<li><strong>URL (proteome):</strong> <a href="https://kidneyapp.shinyapps.io/SGLT2i_proteome/" class="uri">https://kidneyapp.shinyapps.io/SGLT2i_proteome/</a></li>
<li><strong>URL (phosphoproteome):</strong> <a href="https://kidneyapp.shinyapps.io/SGLT2i_phosphoproteome/" class="uri">https://kidneyapp.shinyapps.io/SGLT2i_phosphoproteome/</a></li>
<li><strong>Maintainer:</strong> Vallon and Rinschen labs (La Jolla/Aarhus)</li>
<li><strong>Version:</strong> iSEE {2.8.0}, iSEEu {1.8.0}</li>
</ul>
<p><strong>More:</strong> A set of proteomic and phosphoproteomic datasets containing measurements for 5 organs (kidney, liver, heart, skeletal muscle, white adipose tissue (WAT)) of 2 mouse strains. Accompanies the publication <a href="https://www.ahajournals.org/doi/full/10.1161/CIRCULATIONAHA.123.065517">Metabolic Communication by SGLT2 Inhibition</a>.</p>
</section>
<section id="kalucka-et-al.-cell-2020" class="level2">
<h2 class="anchored" data-anchor-id="kalucka-et-al.-cell-2020">Kalucka et al., Cell, 2020</h2>
<div class="quarto-figure quarto-figure-center">
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14 changes: 7 additions & 7 deletions search.json
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"section": "iSEE COVID Hub",
"text": "iSEE COVID Hub\n\n\n\niSEE COVID Hub (Monocytes).\n\n\n\nURL (B cells): http://shiny.imbei.uni-mainz.de:3838/iSEE_covidIT_Bcells/\nURL (Monocytes): http://shiny.imbei.uni-mainz.de:3838/iSEE_covidIT_Monocytes\nURL (NK cells): http://shiny.imbei.uni-mainz.de:3838/iSEE_covidIT_NKcells/\nURL (T cells): http://shiny.imbei.uni-mainz.de:3838/iSEE_covidIT_Tcells\nMaintainer: Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI)\nVersion: iSEE {2.9.0}\n\nMore: Those apps are listed at http://shiny.imbei.uni-mainz.de:3838/iSEE_covidIT/."
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},
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16 changes: 8 additions & 8 deletions sitemap.xml
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