DESCRIPTION

Package: integratedchipseqanalysisworkshop
Title: Integrated ChIP-seq analysis workshop
Version: 0.1.2
Authors@R:
    c(person(given = "Kai",
           family = "Hu",
           role = c("aut", "cre"),
           email = "kai.hu@umassmed.edu"),
      person(given = "Jianhong",
           family = "Ou",
           role = c("aut"),
           email = "jianhong.ou@duke.edu",
           comment = c(ORCID = "0000-0002-8652-2488")),
      person(given = "Haibo",
           family = "Liu",
           role = c("aut"),
           email = "haibo.liu@umassmed.edu"),
      person(given = "Lihua Julie",
           family = "Zhu",
           role = c("aut"),
           email = "julie.zhu@umassmed.edu",
           comment = c(ORCID = "0000-0001-7416-0590"))
           )
Description: This package discusses the current best practices for ChIP-seq analysis with R packages.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.0
Depends:
    Biobase
Suggests:
    Rcpp,
    GO.db,
    reactome.db,
    EnsDb.Hsapiens.v75,
    TxDb.Hsapiens.UCSC.hg19.knownGene,
    BSgenome.Hsapiens.UCSC.hg19,
    org.Hs.eg.db,
    trackViewer,
    ChIPpeakAnno,
    motifStack,
    biomaRt,
    AnnotationHub,
    UpSetR,
    seqinr,
    motifStack,
    WriteXLS,
    rtracklayer,
    knitr,
    rmarkdown,
    pkgdown,
    bookdown,
    pander,
    GenomicFeatures,
    org.Mm.eg.db
URL: https://hukai916.github.io/IntegratedChIPseqWorkshop/
BugReports: https://github.com/hukai916/IntegratedChIPseqWorkshop/issues/new/choose
VignetteBuilder: knitr
DockerImage: hukai916/integratedchipseqanalysis_workshop:latest