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Update ccf-spo-edit.owl
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@johardi
johardi committed Nov 2, 2023
1 parent a484b66 commit d5beb30
Showing 1 changed file with 64 additions and 52 deletions.
116 changes: 64 additions & 52 deletions src/ontology/ccf-spo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -17,30 +17,33 @@ Annotation(dc:description "This ontology models the relationships between a spat
Annotation(dc:title "CCF Spatial Ontology (CCF-SPO)")
Annotation(dcterms:license "https://creativecommons.org/licenses/by/4.0/")

Declaration(Class(ccf:extraction_set))
Declaration(Class(ccf:retired_spatial_entity))
Declaration(Class(ccf:spatial_entity))
Declaration(Class(ccf:spatial_object_reference))
Declaration(Class(ccf:spatial_placement))
Declaration(ObjectProperty(ccf:extraction_set_for))
Declaration(ObjectProperty(ccf:has_extraction_set))
Declaration(ObjectProperty(ccf:has_object_reference))
Declaration(ObjectProperty(ccf:has_placement))
Declaration(ObjectProperty(ccf:has_reference_organ))
Declaration(ObjectProperty(ccf:placement_for))
Declaration(ObjectProperty(ccf:placement_relative_to))
Declaration(ObjectProperty(ccf:represents_bbox_of))
Declaration(Class(ccf:ExtractionSet))
Declaration(Class(ccf:FtuIllustration))
Declaration(Class(ccf:FtuIllustrationNode))
Declaration(Class(ccf:ImageFile))
Declaration(Class(ccf:RetiredSpatialEntity))
Declaration(Class(ccf:SpatialEntity))
Declaration(Class(ccf:SpatialObjectReference))
Declaration(Class(ccf:SpatialPlacement))
Declaration(AnnotationProperty(ccf:extraction_set_for))
Declaration(AnnotationProperty(ccf:has_extraction_set))
Declaration(AnnotationProperty(ccf:has_object_reference))
Declaration(AnnotationProperty(ccf:has_placement))
Declaration(AnnotationProperty(ccf:has_placements))
Declaration(AnnotationProperty(ccf:has_reference_organ))
Declaration(AnnotationProperty(ccf:placement_for))
Declaration(AnnotationProperty(ccf:placement_relative_to))
Declaration(AnnotationProperty(ccf:represents_bbox_of))
Declaration(AnnotationProperty(ccf:collides_with))
Declaration(AnnotationProperty(ccf:creator_first_name))
Declaration(AnnotationProperty(ccf:creator_last_name))
Declaration(AnnotationProperty(ccf:creator_orcid))
Declaration(AnnotationProperty(ccf:creation_date))
Declaration(AnnotationProperty(ccf:dimension_unit))
Declaration(AnnotationProperty(ccf:file_format))
Declaration(AnnotationProperty(ccf:file_name))
Declaration(AnnotationProperty(ccf:file_subpath))
Declaration(AnnotationProperty(ccf:file_url))
Declaration(AnnotationProperty(ccf:organ_owner_sex))
Declaration(AnnotationProperty(ccf:organ_side))
Declaration(AnnotationProperty(ccf:placement_date))
Declaration(AnnotationProperty(ccf:representation_of))
Declaration(AnnotationProperty(ccf:rotation_unit))
Declaration(AnnotationProperty(ccf:rui_rank))
Expand Down Expand Up @@ -73,20 +76,10 @@ Declaration(Datatype(xsd:date))
AnnotationAssertion(rdfs:comment ccf:collides_with "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:collides_with "collides with")

# Annotation Property: ccf:creator_first_name (creator first name)
# Annotation Property: ccf:creation_date (creation date)

AnnotationAssertion(rdfs:comment ccf:creator_first_name "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:creator_first_name "creator first name")

# Annotation Property: ccf:creator_last_name (creator last name)

AnnotationAssertion(rdfs:comment ccf:creator_last_name "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:creator_last_name "creator last name")

# Annotation Property: ccf:creator_orcid (creator orcid)

AnnotationAssertion(rdfs:comment ccf:creator_orcid "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:creator_orcid "creator orcid")
AnnotationAssertion(rdfs:comment ccf:creation_date "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:creation_date "creation date"@en)

# Annotation Property: ccf:dimension_unit (dimension unit)

Expand Down Expand Up @@ -115,13 +108,18 @@ AnnotationAssertion(rdfs:label ccf:file_url "file url")
# Annotation Property: ccf:organ_owner_sex (organ owner sex)

AnnotationAssertion(rdfs:comment ccf:organ_owner_sex "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:organ_owner_sex "organ owner sex")
AnnotationAssertion(rdfs:label ccf:organ_owner_sex "organ owner sex"@en)

# Annotation Property: ccf:organ_side (organ side)

AnnotationAssertion(rdfs:comment ccf:organ_side "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:organ_side "organ side")

# Annotation Property: ccf:placement_date (placement date)

AnnotationAssertion(rdfs:comment ccf:placement_date "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:placement_date "placement date"@en)

# Annotation Property: ccf:representation_of (representation of)

AnnotationAssertion(rdfs:comment ccf:representation_of "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
Expand Down Expand Up @@ -219,6 +217,11 @@ AnnotationAssertion(rdfs:label ccf:has_object_reference "has object reference")
AnnotationAssertion(rdfs:comment ccf:has_placement "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:has_placement "has placement")

# Object Property: ccf:has_placements (has placements)

AnnotationAssertion(rdfs:comment ccf:has_placements "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:has_placements "has placements"@en)

# Object Property: ccf:has_reference_organ (has reference organ)

AnnotationAssertion(rdfs:comment ccf:has_reference_organ "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
Expand All @@ -245,37 +248,46 @@ AnnotationAssertion(rdfs:label ccf:represents_bbox_of "represents bounding box o
# Classes
############################

# Class: ccf:extraction_set (extraction set)
# Class: ccf:ExtractionSet (Extraction Set)

AnnotationAssertion(rdfs:comment ccf:ExtractionSet "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:ExtractionSet "Extraction Set"@en)

# Class: ccf:FtuIllustration (Functional Tissue Unit (FTU) Illustration)

AnnotationAssertion(rdfs:comment ccf:FtuIllustration "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:FtuIllustration "Functional Tissue Unit (FTU) Illustration"@en)

# Class: ccf:FtuIllustrationNode (Functional Tissue Unit (FTU) Node)

AnnotationAssertion(rdfs:comment ccf:FtuIllustrationNode "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:FtuIllustrationNode "Functional Tissue Unit (FTU) Node"@en)

# Class: ccf:ImageFile (Image File)

AnnotationAssertion(rdfs:comment ccf:extraction_set "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:extraction_set "extraction set")
SubClassOf(ccf:extraction_set ObjectSomeValuesFrom(ccf:extraction_set_for ccf:spatial_entity))
AnnotationAssertion(rdfs:comment ccf:ImageFile "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:ImageFile "Image File"@en)

# Class: ccf:retired_spatial_entity (retired spatial entity)
# Class: ccf:RetiredSpatialEntity (Retired Spatial Entity)

AnnotationAssertion(rdfs:comment ccf:retired_spatial_entity "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:retired_spatial_entity "retired spatial entity")
SubClassOf(ccf:retired_spatial_entity ccf:spatial_entity)
AnnotationAssertion(rdfs:comment ccf:RetiredSpatialEntity "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:RetiredSpatialEntity "Retired Spatial Entity"@en)
SubClassOf(ccf:RetiredSpatialEntity ccf:SpatialEntity)

# Class: ccf:spatial_entity (spatial entity)
# Class: ccf:SpatialEntity (Spatial Entity)

AnnotationAssertion(rdfs:comment ccf:spatial_entity "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:spatial_entity "spatial entity")
SubClassOf(ccf:spatial_entity ObjectSomeValuesFrom(ccf:has_extraction_set ccf:extraction_set))
SubClassOf(ccf:spatial_entity ObjectSomeValuesFrom(ccf:has_object_reference ccf:spatial_object_reference))
SubClassOf(ccf:spatial_entity ObjectSomeValuesFrom(ccf:has_placement ccf:spatial_placement))
SubClassOf(ccf:spatial_entity ObjectSomeValuesFrom(ccf:has_reference_organ ccf:spatial_entity))
AnnotationAssertion(rdfs:comment ccf:SpatialEntity "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:SpatialEntity "Spatial Entity")

# Class: ccf:spatial_object_reference (spatial object reference)
# Class: ccf:SpatialObjectReference (Spatial Object Reference)

AnnotationAssertion(rdfs:comment ccf:spatial_object_reference "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:spatial_object_reference "spatial object reference")
AnnotationAssertion(rdfs:comment ccf:SpatialObjectReference "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:SpatialObjectReference "Spatial Object Reference"@en)

# Class: ccf:spatial_placement (spatial placement)
# Class: ccf:SpatialPlacement (Spatial Placement)

AnnotationAssertion(rdfs:comment ccf:spatial_placement "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:spatial_placement "spatial placement")
SubClassOf(ccf:spatial_placement ObjectSomeValuesFrom(ccf:placement_for ccf:spatial_entity))
AnnotationAssertion(rdfs:comment ccf:SpatialPlacement "Originated from the CCF Spatial Data (CCF-SPO) ontology"@en)
AnnotationAssertion(rdfs:label ccf:SpatialPlacement "Spatial Placement"@en)


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