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# vi: set ts=2 fdm=marker: === Installation === {{{ ==== Dependencies ==== {{{ - nose (for nosetest) - for spline alignment, one of the following two: -- scikit-datasmooth -- rpy2 and R installation -- python-xlwt }}} ==== Instructions ==== {{{ To install you should run $ python setup.py install if you would like to install it to a local folder, you can use $ python setup.py install --prefix=/your/install/path to install it to any path on your system (just make sure that this path is in your $PYTHONPATH and add the./bin folder to your $PATH). }}} === Extra packages === There are some extra packages that can increase the features and improve the speed of the toolset ==== Fast lowess ==== To get fast lowess performance (several orders of magnitude faster), do the following git clone https://github.com/carljv/Will_it_Python.git cd Will_it_Python/MLFH/CH2/lowess\ work/ python setup.py build sudo python setup.py install }}} === Testing === {{{ run all tests $ nosetests test with coverage analysis $ nosetests test --with-coverage --cover-package=msproteomicstoolslib no slow tests $ nosetests -a '!slow' test }}}
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