Updates to JavaDocs

hms-dbmi · Dec 16, 2015 · 3ba0c27 · 3ba0c27
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diff --git a/javadoc/allclasses-frame.html b/javadoc/allclasses-frame.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_45) on Wed Sep 02 22:03:32 EDT 2015 -->
+<!-- Generated by javadoc (1.8.0_45) on Thu Dec 10 16:47:36 CST 2015 -->
 <title>All Classes</title>
-<meta name="date" content="2015-09-02">
+<meta name="date" content="2015-12-10">
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>
@@ -13,12 +13,13 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <div class="indexContainer">
 <ul>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/Action.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action" target="classFrame"><span class="interfaceName">Action</span></a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/action/ActionState.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.action" target="classFrame">ActionState</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/BinaryTreeExecutable.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action" target="classFrame"><span class="interfaceName">BinaryTreeExecutable</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/query/ClauseAbstract.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.query" target="classFrame">ClauseAbstract</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseIsNotTheCorrectType.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception" target="classFrame">ClauseIsNotTheCorrectType</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseNotFoundException.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception" target="classFrame">ClauseNotFoundException</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/result/Column.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.result" target="classFrame">Column</a></li>
-<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/ontology/DataType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.ontology" target="classFrame">DataType</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/ontology/DataType.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.model.ontology" target="classFrame"><span class="interfaceName">DataType</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/Executable.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action" target="classFrame"><span class="interfaceName">Executable</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/ExecutableState.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.action" target="classFrame">ExecutableState</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/process/ExecuteProcess.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.action.process" target="classFrame">ExecuteProcess</a></li>
@@ -30,8 +31,6 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/join/InnerJoin.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.action.join" target="classFrame">InnerJoin</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/IRCTApplication.html" title="class in edu.harvard.hms.dbmi.bd2k.irct" target="classFrame">IRCTApplication</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcess.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.process" target="classFrame">IRCTProcess</a></li>
-<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.process" target="classFrame">IRCTProcessParameter</a></li>
-<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameterType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.process" target="classFrame">IRCTProcessParameterType</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/result/Joinable.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.model.result" target="classFrame"><span class="interfaceName">Joinable</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/join/JoinAction.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action.join" target="classFrame"><span class="interfaceName">JoinAction</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/util/converter/JoinActionConverter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.util.converter" target="classFrame">JoinActionConverter</a></li>
@@ -58,10 +57,15 @@ <h1 class="bar">All&nbsp;Classes</h1>
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 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValue.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.query" target="classFrame">PredicateTypeValue</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValueDataType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.query" target="classFrame">PredicateTypeValueDataType</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/ontology/PrimitiveDataType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.ontology" target="classFrame">PrimitiveDataType</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/process/ProcessAction.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action.process" target="classFrame"><span class="interfaceName">ProcessAction</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/util/converter/ProcessActionConverter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.util.converter" target="classFrame">ProcessActionConverter</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/controller/ProcessController.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.controller" target="classFrame">ProcessController</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/ProcessExecutable.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.action" target="classFrame">ProcessExecutable</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/resource/ProcessResourceImplementationInterface.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.model.resource" target="classFrame"><span class="interfaceName">ProcessResourceImplementationInterface</span></a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessType.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.process" target="classFrame">ProcessType</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.process" target="classFrame">ProcessTypeParameter</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameterType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.process" target="classFrame">ProcessTypeParameterType</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/query/Query.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.query" target="classFrame">Query</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/query/QueryAction.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action.query" target="classFrame"><span class="interfaceName">QueryAction</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/controller/QueryController.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.controller" target="classFrame">QueryController</a></li>
@@ -71,6 +75,7 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/controller/ResourceController.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.controller" target="classFrame">ResourceController</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/util/converter/ResourceImplementationConverter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.util.converter" target="classFrame">ResourceImplementationConverter</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceImplementationInterface.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.model.resource" target="classFrame"><span class="interfaceName">ResourceImplementationInterface</span></a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/ResourceInterfaceException.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception" target="classFrame">ResourceInterfaceException</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/ResourceNotFoundException.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception" target="classFrame">ResourceNotFoundException</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceState.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.resource" target="classFrame">ResourceState</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/result/Result.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.result" target="classFrame">Result</a></li>

diff --git a/javadoc/allclasses-noframe.html b/javadoc/allclasses-noframe.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_45) on Wed Sep 02 22:03:32 EDT 2015 -->
+<!-- Generated by javadoc (1.8.0_45) on Thu Dec 10 16:47:36 CST 2015 -->
 <title>All Classes</title>
-<meta name="date" content="2015-09-02">
+<meta name="date" content="2015-12-10">
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>
@@ -13,12 +13,13 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <div class="indexContainer">
 <ul>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/Action.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action"><span class="interfaceName">Action</span></a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/action/ActionState.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.action">ActionState</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/BinaryTreeExecutable.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action"><span class="interfaceName">BinaryTreeExecutable</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/query/ClauseAbstract.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.query">ClauseAbstract</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseIsNotTheCorrectType.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception">ClauseIsNotTheCorrectType</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/ClauseNotFoundException.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception">ClauseNotFoundException</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/result/Column.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.result">Column</a></li>
-<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/ontology/DataType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.ontology">DataType</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/ontology/DataType.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.model.ontology"><span class="interfaceName">DataType</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/Executable.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action"><span class="interfaceName">Executable</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/ExecutableState.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.action">ExecutableState</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/process/ExecuteProcess.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.action.process">ExecuteProcess</a></li>
@@ -30,8 +31,6 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/join/InnerJoin.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.action.join">InnerJoin</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/IRCTApplication.html" title="class in edu.harvard.hms.dbmi.bd2k.irct">IRCTApplication</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcess.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.process">IRCTProcess</a></li>
-<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.process">IRCTProcessParameter</a></li>
-<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/IRCTProcessParameterType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.process">IRCTProcessParameterType</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/result/Joinable.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.model.result"><span class="interfaceName">Joinable</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/join/JoinAction.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action.join"><span class="interfaceName">JoinAction</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/util/converter/JoinActionConverter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.util.converter">JoinActionConverter</a></li>
@@ -58,10 +57,15 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/PredicateTypeNotSupported.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception">PredicateTypeNotSupported</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValue.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.query">PredicateTypeValue</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/query/PredicateTypeValueDataType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.query">PredicateTypeValueDataType</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/ontology/PrimitiveDataType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.ontology">PrimitiveDataType</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/process/ProcessAction.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action.process"><span class="interfaceName">ProcessAction</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/util/converter/ProcessActionConverter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.util.converter">ProcessActionConverter</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/controller/ProcessController.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.controller">ProcessController</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/ProcessExecutable.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.action">ProcessExecutable</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/resource/ProcessResourceImplementationInterface.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.model.resource"><span class="interfaceName">ProcessResourceImplementationInterface</span></a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessType.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.process">ProcessType</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.process">ProcessTypeParameter</a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/process/ProcessTypeParameterType.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.process">ProcessTypeParameterType</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/query/Query.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.query">Query</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/action/query/QueryAction.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.action.query"><span class="interfaceName">QueryAction</span></a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/controller/QueryController.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.controller">QueryController</a></li>
@@ -71,6 +75,7 @@ <h1 class="bar">All&nbsp;Classes</h1>
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 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/util/converter/ResourceImplementationConverter.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.util.converter">ResourceImplementationConverter</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceImplementationInterface.html" title="interface in edu.harvard.hms.dbmi.bd2k.irct.model.resource"><span class="interfaceName">ResourceImplementationInterface</span></a></li>
+<li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/ResourceInterfaceException.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception">ResourceInterfaceException</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/exception/ResourceNotFoundException.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.exception">ResourceNotFoundException</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/resource/ResourceState.html" title="enum in edu.harvard.hms.dbmi.bd2k.irct.model.resource">ResourceState</a></li>
 <li><a href="edu/harvard/hms/dbmi/bd2k/irct/model/result/Result.html" title="class in edu.harvard.hms.dbmi.bd2k.irct.model.result">Result</a></li>

diff --git a/javadoc/constant-values.html b/javadoc/constant-values.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_45) on Wed Sep 02 22:03:31 EDT 2015 -->
+<!-- Generated by javadoc (1.8.0_45) on Thu Dec 10 16:47:35 CST 2015 -->
 <title>Constant Field Values</title>
-<meta name="date" content="2015-09-02">
+<meta name="date" content="2015-12-10">
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>

diff --git a/javadoc/deprecated-list.html b/javadoc/deprecated-list.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_45) on Wed Sep 02 22:03:32 EDT 2015 -->
+<!-- Generated by javadoc (1.8.0_45) on Thu Dec 10 16:47:36 CST 2015 -->
 <title>Deprecated List</title>
-<meta name="date" content="2015-09-02">
+<meta name="date" content="2015-12-10">
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
 <script type="text/javascript" src="script.js"></script>
 </head>

diff --git a/javadoc/edu/harvard/hms/dbmi/bd2k/irct/IRCTApplication.html b/javadoc/edu/harvard/hms/dbmi/bd2k/irct/IRCTApplication.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_45) on Wed Sep 02 22:03:31 EDT 2015 -->
+<!-- Generated by javadoc (1.8.0_45) on Thu Dec 10 16:47:35 CST 2015 -->
 <title>IRCTApplication</title>
-<meta name="date" content="2015-09-02">
+<meta name="date" content="2015-12-10">
 <link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" title="Style">
 <script type="text/javascript" src="../../../../../../script.js"></script>
 </head>