add changelog #39
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name: Build and Test on Linux with netcdf-c github master | |
on: [push, pull_request] | |
jobs: | |
build-linux: | |
name: Python (${{ matrix.python-version }}) | |
runs-on: ubuntu-latest | |
env: | |
NETCDF_DIR: ${{ github.workspace }}/.. | |
CC: mpicc.mpich | |
#NO_NET: 1 | |
strategy: | |
matrix: | |
python-version: ["3.12"] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
submodules: true | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Ubuntu Dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install mpich libmpich-dev libhdf5-mpich-dev libcurl4-openssl-dev bzip2 libsnappy-dev libblosc-dev libzstd-dev | |
echo "Download and build netCDF github master" | |
git clone https://github.com/Unidata/netcdf-c | |
pushd netcdf-c | |
export CPPFLAGS="-I/usr/include/hdf5/mpich -I${NETCDF_DIR}/include" | |
export LDFLAGS="-L${NETCDF_DIR}/lib" | |
export LIBS="-lhdf5_mpich_hl -lhdf5_mpich -lm -lz" | |
autoreconf -i | |
./configure --prefix $NETCDF_DIR --enable-netcdf-4 --enable-shared --enable-dap --enable-parallel4 | |
make -j 2 | |
sudo make install | |
popd | |
# - name: The job has failed | |
# if: ${{ failure() }} | |
# run: | | |
# cd netcdf-c-${NETCDF_VERSION} | |
# cat config.log | |
- name: Install python dependencies via pip | |
run: | | |
python -m pip install --upgrade pip | |
pip install numpy cython cftime pytest twine wheel check-manifest mpi4py mypy types-setuptools typing-extensions | |
- name: Install netcdf4-python | |
run: | | |
export PATH=${NETCDF_DIR}/bin:${PATH} | |
export NETCDF_PLUGIN_DIR=${{ github.workspace }}/netcdf-c/plugins/plugindir | |
python setup.py install | |
- name: Test | |
run: | | |
export PATH=${NETCDF_DIR}/bin:${PATH} | |
#export HDF5_PLUGIN_PATH=${NETCDF_DIR}/plugins/plugindir | |
python checkversion.py | |
# serial | |
cd test | |
python run_all.py | |
# parallel | |
cd ../examples | |
mpirun.mpich -np 4 python mpi_example.py | |
if [ $? -ne 0 ] ; then | |
echo "hdf5 mpi test failed!" | |
exit 1 | |
else | |
echo "hdf5 mpi test passed!" | |
fi | |
mpirun.mpich -np 4 python mpi_example_compressed.py | |
if [ $? -ne 0 ] ; then | |
echo "hdf5 compressed mpi test failed!" | |
exit 1 | |
else | |
echo "hdf5 compressed mpi test passed!" | |
fi | |
- name: Stubtest | |
run: | | |
stubtest netCDF4 --allowlist .github/stubtest-allowlist --mypy-config-file=pyproject.toml | |
mypy test | |
mypy examples |