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@gwct gwct released this 05 Feb 17:10
· 4 commits to main since this release
d89ef10

Added imputed MK test which estimates the proportion of weakly deleterious polymorphisms from the allele frequency data and excludes them from the total counts of the standard MK table. Also various bug fixes.

  1. added recalculation of allele frequency based on ancestral allele in polarized VCF
  2. fixed a bug causing pN pS undercounting
  3. added imputed MKT extension
  4. added imputed maf cutoff as an argument