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Guidelines for running TOGA and scripts for processing outputs

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TOGA: exon-aware liftover

This repository is a stub for a soon to be built Snakemake workflow for running TOGA, which performs exon-aware liftover of genome annotations from a high-quality reference annotation to a new genome assembly (predicated on the feasibility of whole genome alignment between the two genomes). The utilities directory currently contains a handful of python scripts for various steps of the TOGA workflow.

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Guidelines for running TOGA and scripts for processing outputs

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