v2.1.1 #2
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| # ==================================================================== # | |
| # TITLE: # | |
| # AMR: An R Package for Working with Antimicrobial Resistance Data # | |
| # # | |
| # SOURCE CODE: # | |
| # https://github.com/msberends/AMR # | |
| # # | |
| # PLEASE CITE THIS SOFTWARE AS: # | |
| # Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C # | |
| # (2022). AMR: An R Package for Working with Antimicrobial Resistance # | |
| # Data. Journal of Statistical Software, 104(3), 1-31. # | |
| # https://doi.org/10.18637/jss.v104.i03 # | |
| # # | |
| # Developed at the University of Groningen and the University Medical # | |
| # Center Groningen in The Netherlands, in collaboration with many # | |
| # colleagues from around the world, see our website. # | |
| # # | |
| # This R package is free software; you can freely use and distribute # | |
| # it for both personal and commercial purposes under the terms of the # | |
| # GNU General Public License version 2.0 (GNU GPL-2), as published by # | |
| # the Free Software Foundation. # | |
| # We created this package for both routine data analysis and academic # | |
| # research and it was publicly released in the hope that it will be # | |
| # useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. # | |
| # # | |
| # Visit our website for the full manual and a complete tutorial about # | |
| # how to conduct AMR data analysis: https://msberends.github.io/AMR/ # | |
| # ==================================================================== # | |
| # Create a website from the R documentation using pkgdown | |
| # Git commit and push to the 'gh-pages' branch | |
| on: | |
| push: | |
| # only on main | |
| branches: 'main' | |
| name: Update website | |
| jobs: | |
| update-website: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| # this is to keep timestamps, the default fetch-depth: 1 gets the timestamps of the moment of cloning | |
| fetch-depth: 0 | |
| - name: Preserve timestamps | |
| run: | | |
| sudo apt install git-restore-mtime | |
| git restore-mtime | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "release" | |
| # use RStudio Package Manager (RSPM) to quickly install packages | |
| use-public-rspm: true | |
| - name: Set up R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| # add extra packages for website articles: | |
| extra-packages: | | |
| any::pkgdown | |
| any::tidymodels | |
| any::data.table | |
| # Send updates to repo using GH Actions bot | |
| - name: Create website in separate branch | |
| run: | | |
| git config user.name "github-actions" | |
| git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE, clean = TRUE, install = TRUE, branch = "gh-pages")' |