guille0387 / Cabana-secondment Public

Scripts written while working at the EBI as a secondee

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
viral_taxonomic_pipeline		viral_taxonomic_pipeline
Analyse_custom_pops.py		Analyse_custom_pops.py
Contig_descriptive_statistics.py		Contig_descriptive_statistics.py
Genome_fasta_split.py		Genome_fasta_split.py
Host_cleaning_process.py		Host_cleaning_process.py
README.md		README.md
Retrieve_refseq_ftp_url.py		Retrieve_refseq_ftp_url.py
Table_viral_contig_maps.py		Table_viral_contig_maps.py
ViPhOGs_chunk_files.py		ViPhOGs_chunk_files.py
VirFinder_analysis_Euk.R		VirFinder_analysis_Euk.R
VirFinder_analysis_Prok.R		VirFinder_analysis_Prok.R
VirFinder_analysis_paral_Prok.R		VirFinder_analysis_paral_Prok.R
VirFinder_metrics.py		VirFinder_metrics.py
Viral_prediction_benchmark.py		Viral_prediction_benchmark.py
classify_viral_contigs.py		classify_viral_contigs.py
cov_viral_contigs.py		cov_viral_contigs.py
cp_assemblies_to_virome_contigs.py		cp_assemblies_to_virome_contigs.py
custom_contig_mix.sh		custom_contig_mix.sh
detect_viral_contigs.py		detect_viral_contigs.py
fasta_split.py		fasta_split.py
filter_contigs_len.py		filter_contigs_len.py
generate_mixed_files.py		generate_mixed_files.py
generate_viral_gbk_files.py		generate_viral_gbk_files.py
get_ViPhOG_lineages.py		get_ViPhOG_lineages.py
mVCs_from_assembly.sh		mVCs_from_assembly.sh
per_contig_vpHMMs_hits.py		per_contig_vpHMMs_hits.py
select_seqs_by_ID.py		select_seqs_by_ID.py
separate_bacteria_files.sh		separate_bacteria_files.sh
split_dirs.sh		split_dirs.sh