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1. panaroo panaroo Public

   An updated pipeline for pangenome investigation

   Python 272 33

2. panstripe panstripe Public

   post processing of bacterial pangenome gene presence/absence matrices

   R 52 6

3. fastbaps fastbaps Public

   A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

   R 58 8

4. tracs tracs Public

   Fast pairwise transmission inference from single genome and/or metagenomic data

   Python 19 1

5. rhierbaps rhierbaps Public

   rhierbaps: R implementation of hierBAPS

   R 34 3

6. pairsnp pairsnp Public

   A set of scripts for calculating pairwise SNP distance

   38 7