Merge pull request quarkusio#42088 from gsmet/3.13.0-backports-2

[3.13] 3.13.0 backports 2

bom/application/pom.xml

@@ -131,8 +131,8 @@
         <shrinkwrap.version>1.2.6</shrinkwrap.version>
         <hamcrest.version>2.2</hamcrest.version><!-- The version needs to be compatible with both REST Assured and Awaitility -->
         <junit.jupiter.version>5.10.3</junit.jupiter.version>
-        <infinispan.version>15.0.5.Final</infinispan.version>
-        <infinispan.protostream.version>5.0.5.Final</infinispan.protostream.version>
+        <infinispan.version>15.0.6.Final</infinispan.version>
+        <infinispan.protostream.version>5.0.7.Final</infinispan.protostream.version>
         <caffeine.version>3.1.5</caffeine.version>
         <netty.version>4.1.111.Final</netty.version>
         <brotli4j.version>1.16.0</brotli4j.version>

core/deployment/src/main/java/io/quarkus/deployment/ApplicationArchive.java

@@ -6,6 +6,7 @@
 
 import org.jboss.jandex.IndexView;
 
+import io.quarkus.bootstrap.model.AppArtifactKey;
 import io.quarkus.bootstrap.model.PathsCollection;
 import io.quarkus.maven.dependency.ArtifactKey;
 import io.quarkus.maven.dependency.ResolvedDependency;
@@ -71,6 +72,12 @@ public interface ApplicationArchive {
      */
     PathCollection getResolvedPaths();
 
+    /**
+     * @deprecated in favor of {@link #getKey()}
+     * @return the artifact key or null if not available
+     */
+    AppArtifactKey getArtifactKey();
+
     /**
      *
      * @return the artifact key or null if not available

core/deployment/src/main/java/io/quarkus/deployment/ApplicationArchiveImpl.java

@@ -8,6 +8,7 @@
 
 import org.jboss.jandex.IndexView;
 
+import io.quarkus.bootstrap.model.AppArtifactKey;
 import io.quarkus.bootstrap.model.PathsCollection;
 import io.quarkus.builder.item.MultiBuildItem;
 import io.quarkus.maven.dependency.ArtifactKey;
@@ -61,6 +62,21 @@ public PathCollection getResolvedPaths() {
         return PathList.from(openTree.getOriginalTree().getRoots());
     }
 
+    @Override
+    @Deprecated
+    /**
+     * @deprecated in favor of {@link #getKey()}
+     * @return archive key
+     */
+    public AppArtifactKey getArtifactKey() {
+        if (resolvedDependency == null) {
+            return null;
+        }
+        ArtifactKey artifactKey = resolvedDependency.getKey();
+        return new AppArtifactKey(artifactKey.getGroupId(), artifactKey.getArtifactId(), artifactKey.getClassifier(),
+                artifactKey.getType());
+    }
+
     @Override
     public ArtifactKey getKey() {
         return resolvedDependency != null ? resolvedDependency.getKey() : null;

core/processor/src/main/java/io/quarkus/annotation/processor/generate_doc/ConfigDocItemFinder.java

@@ -396,6 +396,19 @@ private List<ConfigDocItem> recursivelyFindConfigItems(Element element, String r
                 configDocKey.setJavaDocSiteLink(getJavaDocSiteLink(type));
                 ConfigDocItem configDocItem = new ConfigDocItem();
                 configDocItem.setConfigDocKey(configDocKey);
+
+                // If there is already a config item with the same key it comes from a super type, and we need to override it
+                ConfigDocItem parent = null;
+                for (ConfigDocItem docItem : configDocItems) {
+                    if (docItem.getConfigDocKey() != null && docItem.getConfigDocKey().getKey().equals(configDocKey.getKey())) {
+                        parent = docItem;
+                        break;
+                    }
+                }
+                // We may want to merge the metadata, but let's keep this simple for now
+                if (parent != null) {
+                    configDocItems.remove(parent);
+                }
                 configDocItems.add(configDocItem);
             }
         }

core/runtime/src/main/java/io/quarkus/runtime/logging/FileConfig.java

@@ -2,6 +2,7 @@
 
 import java.io.File;
 import java.nio.charset.Charset;
+import java.time.format.DateTimeFormatter;
 import java.util.Optional;
 import java.util.logging.Level;
 
@@ -84,6 +85,8 @@ public static class RotationConfig {
          * The file handler rotation file suffix.
          * When used, the file will be rotated based on its suffix.
          * <p>
+         * The suffix must be in a date-time format that is understood by {@link DateTimeFormatter}.
+         * <p>
          * Example fileSuffix: .yyyy-MM-dd
          * <p>
          * Note: If the suffix ends with .zip or .gz, the rotation file will also be compressed.

devtools/gradle/gradle-application-plugin/src/main/java/io/quarkus/gradle/tasks/QuarkusDev.java

@@ -342,7 +342,7 @@ public void close() throws IOException {
             })) {
                 return scanner.nextLine();
             } catch (Exception e) {
-                getLogger().warn("Failed to collect user input for analytics", e);
+                getLogger().debug("Failed to collect user input for analytics", e);
                 return "";
             }
         });

devtools/gradle/gradle-extension-plugin/src/main/java/io/quarkus/extension/gradle/tasks/ExtensionDescriptorTask.java

@@ -12,7 +12,6 @@
 import java.util.Iterator;
 import java.util.List;
 import java.util.Map;
-import java.util.Objects;
 import java.util.Properties;
 import java.util.Set;
 
@@ -37,13 +36,14 @@
 import com.fasterxml.jackson.dataformat.yaml.YAMLFactory;
 
 import io.quarkus.bootstrap.BootstrapConstants;
+import io.quarkus.bootstrap.model.AppArtifactCoords;
+import io.quarkus.bootstrap.model.AppArtifactKey;
 import io.quarkus.bootstrap.model.ApplicationModelBuilder;
 import io.quarkus.devtools.project.extensions.ScmInfoProvider;
 import io.quarkus.extension.gradle.QuarkusExtensionConfiguration;
 import io.quarkus.extension.gradle.dsl.Capability;
 import io.quarkus.extension.gradle.dsl.RemovedResource;
 import io.quarkus.fs.util.ZipUtils;
-import io.quarkus.maven.dependency.ArtifactCoords;
 import io.quarkus.maven.dependency.ArtifactKey;
 import io.quarkus.maven.dependency.GACT;
 
@@ -113,9 +113,9 @@ private void generateQuarkusExtensionProperties(Path metaInfDir) {
         if (conditionalDependencies != null && !conditionalDependencies.isEmpty()) {
             final StringBuilder buf = new StringBuilder();
             int i = 0;
-            buf.append(ArtifactCoords.fromString(conditionalDependencies.get(i++)));
+            buf.append(AppArtifactCoords.fromString(conditionalDependencies.get(i++)).toString());
             while (i < conditionalDependencies.size()) {
-                buf.append(' ').append(ArtifactCoords.fromString(conditionalDependencies.get(i++)));
+                buf.append(' ').append(AppArtifactCoords.fromString(conditionalDependencies.get(i++)).toString());
             }
             props.setProperty(BootstrapConstants.CONDITIONAL_DEPENDENCIES, buf.toString());
         }
@@ -315,7 +315,7 @@ private void computeArtifactCoords(ObjectNode extObject) {
             }
         }
         if (artifactNode == null || groupId == null || artifactId == null || version == null) {
-            final ArtifactCoords coords = ArtifactCoords.of(
+            final AppArtifactCoords coords = new AppArtifactCoords(
                     groupId == null ? projectInfo.get("group") : groupId,
                     artifactId == null ? projectInfo.get("name") : artifactId,
                     null,
@@ -363,7 +363,7 @@ private void computeQuarkusExtensions(ObjectNode extObject) {
         ObjectNode metadataNode = getMetadataNode(extObject);
         Set<ResolvedArtifact> extensions = new HashSet<>();
         for (ResolvedArtifact resolvedArtifact : getClasspath().getResolvedConfiguration().getResolvedArtifacts()) {
-            if (Objects.equals(resolvedArtifact.getExtension(), "jar")) {
+            if (resolvedArtifact.getExtension().equals("jar")) {
                 Path p = resolvedArtifact.getFile().toPath();
                 if (Files.isDirectory(p) && isExtension(p)) {
                     extensions.add(resolvedArtifact);
@@ -382,7 +382,7 @@ private void computeQuarkusExtensions(ObjectNode extObject) {
         for (ResolvedArtifact extension : extensions) {
             ModuleVersionIdentifier id = extension.getModuleVersion().getId();
             extensionArray
-                    .add(ArtifactKey.of(id.getGroup(), id.getName(), extension.getClassifier(), extension.getExtension())
+                    .add(new AppArtifactKey(id.getGroup(), id.getName(), extension.getClassifier(), extension.getExtension())
                             .toGacString());
         }
     }

devtools/gradle/gradle-extension-plugin/src/main/java/io/quarkus/extension/gradle/tasks/ValidateExtensionTask.java

@@ -15,12 +15,12 @@
 import org.gradle.api.tasks.Internal;
 import org.gradle.api.tasks.TaskAction;
 
+import io.quarkus.bootstrap.model.AppArtifactKey;
 import io.quarkus.extension.gradle.QuarkusExtensionConfiguration;
 import io.quarkus.gradle.tooling.dependency.ArtifactExtensionDependency;
 import io.quarkus.gradle.tooling.dependency.DependencyUtils;
 import io.quarkus.gradle.tooling.dependency.ExtensionDependency;
 import io.quarkus.gradle.tooling.dependency.ProjectExtensionDependency;
-import io.quarkus.maven.dependency.ArtifactKey;
 
 public class ValidateExtensionTask extends DefaultTask {
 
@@ -59,12 +59,12 @@ public void setDeploymentModuleClasspath(Configuration deploymentModuleClasspath
     public void validateExtension() {
         Set<ResolvedArtifact> runtimeArtifacts = getRuntimeModuleClasspath().getResolvedConfiguration().getResolvedArtifacts();
 
-        List<ArtifactKey> deploymentModuleKeys = collectRuntimeExtensionsDeploymentKeys(runtimeArtifacts);
-        List<ArtifactKey> invalidRuntimeArtifacts = findExtensionInConfiguration(runtimeArtifacts, deploymentModuleKeys);
+        List<AppArtifactKey> deploymentModuleKeys = collectRuntimeExtensionsDeploymentKeys(runtimeArtifacts);
+        List<AppArtifactKey> invalidRuntimeArtifacts = findExtensionInConfiguration(runtimeArtifacts, deploymentModuleKeys);
 
         Set<ResolvedArtifact> deploymentArtifacts = getDeploymentModuleClasspath().getResolvedConfiguration()
                 .getResolvedArtifacts();
-        List<ArtifactKey> existingDeploymentModuleKeys = findExtensionInConfiguration(deploymentArtifacts,
+        List<AppArtifactKey> existingDeploymentModuleKeys = findExtensionInConfiguration(deploymentArtifacts,
                 deploymentModuleKeys);
         deploymentModuleKeys.removeAll(existingDeploymentModuleKeys);
 
@@ -81,60 +81,64 @@ public void validateExtension() {
         }
     }
 
-    private List<ArtifactKey> collectRuntimeExtensionsDeploymentKeys(Set<ResolvedArtifact> runtimeArtifacts) {
-        List<ArtifactKey> runtimeExtensions = new ArrayList<>();
+    private List<AppArtifactKey> collectRuntimeExtensionsDeploymentKeys(Set<ResolvedArtifact> runtimeArtifacts) {
+        List<AppArtifactKey> runtimeExtensions = new ArrayList<>();
         for (ResolvedArtifact resolvedArtifact : runtimeArtifacts) {
             ExtensionDependency<?> extension = DependencyUtils.getExtensionInfoOrNull(getProject(), resolvedArtifact);
             if (extension != null) {
-                if (extension instanceof ProjectExtensionDependency ped) {
+                if (extension instanceof ProjectExtensionDependency) {
+                    final ProjectExtensionDependency ped = (ProjectExtensionDependency) extension;
+
                     runtimeExtensions
-                            .add(ArtifactKey.ga(ped.getDeploymentModule().getGroup().toString(),
+                            .add(new AppArtifactKey(ped.getDeploymentModule().getGroup().toString(),
                                     ped.getDeploymentModule().getName()));
-                } else if (extension instanceof ArtifactExtensionDependency aed) {
-                    runtimeExtensions.add(ArtifactKey.ga(aed.getDeploymentModule().getGroupId(),
+                } else if (extension instanceof ArtifactExtensionDependency) {
+                    final ArtifactExtensionDependency aed = (ArtifactExtensionDependency) extension;
+
+                    runtimeExtensions.add(new AppArtifactKey(aed.getDeploymentModule().getGroupId(),
                             aed.getDeploymentModule().getArtifactId()));
                 }
             }
         }
         return runtimeExtensions;
     }
 
-    private List<ArtifactKey> findExtensionInConfiguration(Set<ResolvedArtifact> deploymentArtifacts,
-            List<ArtifactKey> extensions) {
-        List<ArtifactKey> foundExtensions = new ArrayList<>();
+    private List<AppArtifactKey> findExtensionInConfiguration(Set<ResolvedArtifact> deploymentArtifacts,
+            List<AppArtifactKey> extensions) {
+        List<AppArtifactKey> foundExtensions = new ArrayList<>();
 
         for (ResolvedArtifact deploymentArtifact : deploymentArtifacts) {
-            ArtifactKey key = toArtifactKey(deploymentArtifact.getModuleVersion());
+            AppArtifactKey key = toAppArtifactKey(deploymentArtifact.getModuleVersion());
             if (extensions.contains(key)) {
                 foundExtensions.add(key);
             }
         }
         return foundExtensions;
     }
 
-    private void printValidationErrors(List<ArtifactKey> invalidRuntimeArtifacts,
-            List<ArtifactKey> missingDeploymentArtifacts) {
+    private void printValidationErrors(List<AppArtifactKey> invalidRuntimeArtifacts,
+            List<AppArtifactKey> missingDeploymentArtifacts) {
         Logger log = getLogger();
         log.error("Quarkus Extension Dependency Verification Error");
 
         if (!invalidRuntimeArtifacts.isEmpty()) {
             log.error("The following deployment artifact(s) appear on the runtime classpath: ");
-            for (ArtifactKey invalidRuntimeArtifact : invalidRuntimeArtifacts) {
+            for (AppArtifactKey invalidRuntimeArtifact : invalidRuntimeArtifacts) {
                 log.error("- " + invalidRuntimeArtifact);
             }
         }
 
         if (!missingDeploymentArtifacts.isEmpty()) {
             log.error("The following deployment artifact(s) were found to be missing in the deployment module: ");
-            for (ArtifactKey missingDeploymentArtifact : missingDeploymentArtifacts) {
+            for (AppArtifactKey missingDeploymentArtifact : missingDeploymentArtifacts) {
                 log.error("- " + missingDeploymentArtifact);
             }
         }
 
         throw new GradleException("Quarkus Extension Dependency Verification Error. See logs below");
     }
 
-    private static ArtifactKey toArtifactKey(ResolvedModuleVersion artifactId) {
-        return ArtifactKey.ga(artifactId.getId().getGroup(), artifactId.getId().getName());
+    private static AppArtifactKey toAppArtifactKey(ResolvedModuleVersion artifactId) {
+        return new AppArtifactKey(artifactId.getId().getGroup(), artifactId.getId().getName());
     }
 }

devtools/maven/src/main/java/io/quarkus/maven/DevMojo.java

@@ -444,7 +444,7 @@ public void close() throws IOException {
             })) {
                 return scanner.nextLine();
             } catch (Exception e) {
-                getLog().warn("Failed to collect user input for analytics", e);
+                getLog().debug("Failed to collect user input for analytics", e);
                 return "";
             }
         });

docs/src/main/asciidoc/mailer-reference.adoc

@@ -418,6 +418,8 @@ quarkus.mailer.start-tls=REQUIRED
 quarkus.mailer.trust-all=true
 ----
 
+IMPORTANT: To use `START_TLS`, make sure you set `tls` to `false` and `start-tls` to `REQUIRED` or `OPTIONAL`.
+
 === Configuring SSL/TLS
 
 To establish a TLS connection, you need to configure a _named_ configuration using the xref:./tls-registry-reference.adoc[TLS registry]:

docs/src/main/java/io/quarkus/docs/generation/AssembleDownstreamDocumentation.java

@@ -355,6 +355,15 @@ private static void copyAsciidoc(Path sourceFile, Path targetFile, Set<String> d
             lineNumber++;
 
             if (!documentTitleFound && line.startsWith("= ")) {
+                // anything in the buffer needs to be appended
+                // we don't need to rewrite it as before the title we can only have the preamble
+                // and we don't want to change anything in the preamble
+                // if at some point we want to adjust the preamble, make sure to do it in a separate method and not reuse rewriteContent
+                if (currentBuffer.length() > 0) {
+                    rewrittenGuide.append(currentBuffer);
+                    currentBuffer.setLength(0);
+                }
+
                 // this is the document title
                 rewrittenGuide.append(line.replace(PROJECT_NAME_ATTRIBUTE, RED_HAT_BUILD_OF_QUARKUS) + "\n");
                 documentTitleFound = true;

extensions/container-image/container-image-jib/deployment/src/main/java/io/quarkus/container/image/jib/deployment/JibProcessor.java

@@ -453,9 +453,10 @@ private JibContainerBuilder createContainerBuilderFromFastJar(String baseJvmImag
             entrypoint = List.of(RUN_JAVA_PATH);
             envVars.put("JAVA_APP_JAR", workDirInContainer + "/" + JarResultBuildStep.QUARKUS_RUN_JAR);
             envVars.put("JAVA_APP_DIR", workDirInContainer.toString());
-            envVars.put("JAVA_OPTS_APPEND", String.join(" ", determineEffectiveJvmArguments(jibConfig, appCDSResult)));
+            envVars.put("JAVA_OPTS_APPEND",
+                    String.join(" ", determineEffectiveJvmArguments(jibConfig, appCDSResult, isMutableJar)));
         } else {
-            List<String> effectiveJvmArguments = determineEffectiveJvmArguments(jibConfig, appCDSResult);
+            List<String> effectiveJvmArguments = determineEffectiveJvmArguments(jibConfig, appCDSResult, isMutableJar);
             List<String> argsList = new ArrayList<>(3 + effectiveJvmArguments.size());
             argsList.add("java");
             argsList.addAll(effectiveJvmArguments);
@@ -693,7 +694,8 @@ private void mayInheritEntrypoint(JibContainerBuilder jibContainerBuilder, List<
     }
 
     private List<String> determineEffectiveJvmArguments(ContainerImageJibConfig jibConfig,
-            Optional<AppCDSResultBuildItem> appCDSResult) {
+            Optional<AppCDSResultBuildItem> appCDSResult,
+            boolean isMutableJar) {
         List<String> effectiveJvmArguments = new ArrayList<>(jibConfig.jvmArguments);
         jibConfig.jvmAdditionalArguments.ifPresent(effectiveJvmArguments::addAll);
         if (appCDSResult.isPresent()) {
@@ -708,6 +710,10 @@ private List<String> determineEffectiveJvmArguments(ContainerImageJibConfig jibC
                 effectiveJvmArguments.add("-XX:SharedArchiveFile=" + appCDSResult.get().getAppCDS().getFileName().toString());
             }
         }
+        if (isMutableJar) {
+            // see https://github.com/quarkusio/quarkus/issues/41797
+            effectiveJvmArguments.add("-Dquarkus.package.output-directory=${PWD}");
+        }
         return effectiveJvmArguments;
     }
 
@@ -746,7 +752,7 @@ private JibContainerBuilder createContainerBuilderFromLegacyJar(String baseJvmIm
             // when there is no custom entry point, we just set everything up for a regular java run
             if (!jibConfig.jvmEntrypoint.isPresent()) {
                 javaContainerBuilder
-                        .addJvmFlags(determineEffectiveJvmArguments(jibConfig, Optional.empty()))
+                        .addJvmFlags(determineEffectiveJvmArguments(jibConfig, Optional.empty(), false))
                         .setMainClass(mainClassBuildItem.getClassName());
             }
 

extensions/mongodb-client/deployment/src/main/java/io/quarkus/mongodb/deployment/DevServicesMongoProcessor.java

@@ -313,5 +313,10 @@ public String getReplicaSetUrl(String databaseName) {
                 return super.getReplicaSetUrl(databaseName);
             }
         }
+
+        @Override
+        public String getHost() {
+            return useSharedNetwork ? hostName : super.getHost();
+        }
     }
 }

extensions/opentelemetry/runtime/src/main/java/io/quarkus/opentelemetry/runtime/config/runtime/exporter/OtlpExporterConfig.java

@@ -5,11 +5,9 @@
 import java.util.Optional;
 import java.util.OptionalInt;
 
-import io.quarkus.runtime.annotations.ConfigGroup;
 import io.smallrye.config.WithDefault;
 import io.smallrye.config.WithName;
 
-@ConfigGroup
 public interface OtlpExporterConfig {
     String DEFAULT_GRPC_BASE_URI = "http://localhost:4317/";
     String DEFAULT_HTTP_BASE_URI = "http://localhost:4318/";