Requirements

• Java (version = 6)
• maven (version >= 3)
• git
• m2e eclipse plugin (should be default in Juno)

Downloads

I've set up a job on our CI Jenkins instance, the latest executable jar can be downloaded from:

https://code.ceres.auckland.ac.nz/jenkins/job/phyml-grid-SNAPSHOT/

Importing into Eclipse

• File -> Import... -> Maven -> Existing Maven Projects
• Next
• Browse to this directory
• Finish

Building outside of IDE

mvn clean install

Running commandline client

java -cp target/phyml-grid-binary.jar nz.org.nesi.phyml.Client --help    # print usage
java -cp target/phyml-grid-binary.jar nz.org.nesi.phyml.Client -f <path_to_phyml_inputfile> -w 10h -p <phyml_cli_parameters> -c <cpus>

Running gui

java -jar target/phyml-grid-binary.jar