Runnable jar fails for 5.2.0 #12589

sbortman · 2022-06-24T00:34:34Z

Expected Behavior

App should start normally

Actual Behaviour

Get a stack trace, app doesn't start.

ava.nio.file.FileSystemAlreadyExistsException: null
	at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
	at java.base/java.util.concurrent.ForkJoinTask.getThrowableException(ForkJoinTask.java:603)
	at java.base/java.util.concurrent.ForkJoinTask.reportException(ForkJoinTask.java:678)
	at java.base/java.util.concurrent.ForkJoinTask.join(ForkJoinTask.java:722)
	at io.micronaut.core.io.service.SoftServiceLoader$DefaultServiceCollector.collect(SoftServiceLoader.java:536)
	at io.micronaut.core.io.service.SoftServiceLoader.collectDynamicServices(SoftServiceLoader.java:199)
	at io.micronaut.core.io.service.SoftServiceLoader.collectAll(SoftServiceLoader.java:175)
	at io.micronaut.context.DefaultBeanContext.resolveBeanDefinitionReferences(DefaultBeanContext.java:1730)
	at io.micronaut.context.DefaultApplicationContext.isBootstrapPropertySourceLocatorPresent(DefaultApplicationContext.java:153)
	at io.micronaut.context.DefaultApplicationContext.isBootstrapEnabled(DefaultApplicationContext.java:149)
	at io.micronaut.context.DefaultApplicationContext.createEnvironment(DefaultApplicationContext.java:137)
	at io.micronaut.context.DefaultApplicationContext.getEnvironment(DefaultApplicationContext.java:181)
	at grails.boot.GrailsApp.createApplicationContext(GrailsApp.groovy:181)
	at org.springframework.boot.SpringApplication.run(SpringApplication.java:305)
	at grails.boot.GrailsApp.run(GrailsApp.groovy:99)
	at grails.boot.GrailsApp.run(GrailsApp.groovy:485)
	at grails.boot.GrailsApp.run(GrailsApp.groovy:472)
	at foo.app.Application.main(Application.groovy:11)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:49)
	at org.springframework.boot.loader.Launcher.launch(Launcher.java:108)
	at org.springframework.boot.loader.Launcher.launch(Launcher.java:58)
	at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:65)
Caused by: java.nio.file.FileSystemAlreadyExistsException: null
	at jdk.zipfs/jdk.nio.zipfs.ZipFileSystemProvider.newFileSystem(ZipFileSystemProvider.java:102)
	at java.base/java.nio.file.FileSystems.newFileSystem(FileSystems.java:337)
	at java.base/java.nio.file.FileSystems.newFileSystem(FileSystems.java:286)
	at io.micronaut.core.io.IOUtils.eachFile(IOUtils.java:88)
	at io.micronaut.core.io.service.SoftServiceLoader.computeServiceTypeNames(SoftServiceLoader.java:277)
	at io.micronaut.core.io.service.SoftServiceLoader.access$1100(SoftServiceLoader.java:68)
	at io.micronaut.core.io.service.SoftServiceLoader$MicronautMetaServicesLoader.compute(SoftServiceLoader.java:565)
	at java.base/java.util.concurrent.RecursiveAction.exec(RecursiveAction.java:189)
	at java.base/java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290)
	at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020)
	at java.base/java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656)
	at java.base/java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594)
	at java.base/java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183)

Steps To Reproduce

Install SDKMan
sdk install grails 5.2.0
grails create-app foobar
cd foobar
./gradlew clean bootJar
java -jar build/libs/foobar-0.1.jar

Environment Information

MacOSX 12.4

sdk current

Using:

ant: 1.10.12
gradle: 7.4.2
grails: 5.2.0
groovy: 3.0.11
java: 11.0.15.fx-zulu
kotlin: 1.7.0
maven: 3.8.6
micronaut: 3.5.2
springboot: 2.7.1
tomcat: 10.0.22
SBortman-MacBook-Pro /tmp/foo-app $

Example Application

No response

Version

5.2.0

The text was updated successfully, but these errors were encountered:

spmcewen · 2022-06-24T16:46:37Z

I ran into this problem as well when launching the Spring Boot jar on macOS. Launching the jar in a Linux docker container fails with:

io.micronaut.context.exceptions.NoSuchBeanException: No bean of type [io.micronaut.context.event.ApplicationEventPublisher<io.micronaut.context.event.StartupEvent>] exists. Make sure the bean is not disabled by bean requirements (enable trace logging for 'io.micronaut.context.condition' to check) and if the bean is enabled then ensure the class is declared a bean and annotation processing is enabled (for Java and Kotlin the 'micronaut-inject-java' dependency should be configured as an annotation processor).

which sounds similar to this Micronaut issue: issue with Micronaut: micronaut-projects/micronaut-core#7144. The workarounds in that thread did not work for me.

pangeaos · 2022-06-25T21:55:32Z

I ran with the same problem.

codeconsole · 2022-06-26T20:29:24Z

Example App:

sdk use java 22.1.0.r11-grl 
git clone https://github.com/codeconsole/website
cd website
./gradlew bootJar

% java -jar build/libs/website-0.1.jar 
2022-06-26 15:26:14.607 ERROR --- [           main] o.s.boot.SpringApplication               : Application run failed

java.nio.file.ClosedFileSystemException: null
	at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
	at java.base/java.util.concurrent.ForkJoinTask.getThrowableException(ForkJoinTask.java:603)
	at java.base/java.util.concurrent.ForkJoinTask.reportException(ForkJoinTask.java:678)
	at java.base/java.util.concurrent.ForkJoinTask.join(ForkJoinTask.java:722)
	at io.micronaut.core.io.service.SoftServiceLoader$DefaultServiceCollector.collect(SoftServiceLoader.java:536)
	at io.micronaut.core.io.service.SoftServiceLoader.collectDynamicServices(SoftServiceLoader.java:199)
	at io.micronaut.core.io.service.SoftServiceLoader.collectAll(SoftServiceLoader.java:175)
	at io.micronaut.context.DefaultBeanContext.resolveBeanDefinitionReferences(DefaultBeanContext.java:1730)
	at io.micronaut.context.DefaultApplicationContext.isBootstrapPropertySourceLocatorPresent(DefaultApplicationContext.java:153)
	at io.micronaut.context.DefaultApplicationContext.isBootstrapEnabled(DefaultApplicationContext.java:149)
	at io.micronaut.context.DefaultApplicationContext.createEnvironment(DefaultApplicationContext.java:137)
	at io.micronaut.context.DefaultApplicationContext.getEnvironment(DefaultApplicationContext.java:181)
	at grails.boot.GrailsApp.createApplicationContext(GrailsApp.groovy:181)
	at org.springframework.boot.SpringApplication.run(SpringApplication.java:305)
	at grails.boot.GrailsApp.run(GrailsApp.groovy:99)

codeconsole · 2022-06-26T20:36:46Z

https://github.com/grails/grails-core/blob/5.2.x/grails-core/src/main/groovy/grails/boot/GrailsApp.groovy#L181-L183

micronautContext
        .environment
        .addPropertySource("grails-config", [(MicronautBeanFactoryConfiguration.PREFIX + ".bean-excludes"): (Object)beanExcludes])

jnunderwood · 2022-06-27T20:26:32Z

I get the following exception when running in a Linux Docker container using JDK 11:

java.nio.file.ClosedFileSystemException: null
        at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
        at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
        at java.base/java.util.concurrent.ForkJoinTask.getThrowableException(ForkJoinTask.java:603)
        at java.base/java.util.concurrent.ForkJoinTask.reportException(ForkJoinTask.java:678)
        at java.base/java.util.concurrent.ForkJoinTask.join(ForkJoinTask.java:722)
        at io.micronaut.core.io.service.SoftServiceLoader$DefaultServiceCollector.collect(SoftServiceLoader.java:536)
        at io.micronaut.core.io.service.SoftServiceLoader.collectDynamicServices(SoftServiceLoader.java:199)
        at io.micronaut.core.io.service.SoftServiceLoader.collectAll(SoftServiceLoader.java:175)
        at io.micronaut.context.DefaultBeanContext.resolveBeanDefinitionReferences(DefaultBeanContext.java:1730)
        at io.micronaut.context.DefaultApplicationContext.isBootstrapPropertySourceLocatorPresent(DefaultApplicationContext.java:153)
        at io.micronaut.context.DefaultApplicationContext.isBootstrapEnabled(DefaultApplicationContext.java:149)
        at io.micronaut.context.DefaultApplicationContext.createEnvironment(DefaultApplicationContext.java:137)
        at io.micronaut.context.DefaultApplicationContext.getEnvironment(DefaultApplicationContext.java:181)
        at grails.boot.GrailsApp.createApplicationContext(GrailsApp.groovy:181)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:305)
        at grails.boot.GrailsApp.run(GrailsApp.groovy:99)
        at grails.boot.GrailsApp.run(GrailsApp.groovy:485)
        at grails.boot.GrailsApp.run(GrailsApp.groovy:472)
        at grails.boot.GrailsApp$run.call(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:125)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:148)
        at cleanhands.Application.main(Application.groovy:14)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.base/java.lang.reflect.Method.invoke(Method.java:566)
        at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:49)
        at org.springframework.boot.loader.Launcher.launch(Launcher.java:108)
        at org.springframework.boot.loader.Launcher.launch(Launcher.java:58)
        at org.springframework.boot.loader.WarLauncher.main(WarLauncher.java:59)
Caused by: java.nio.file.ClosedFileSystemException: null
        at jdk.zipfs/jdk.nio.zipfs.ZipFileSystem.ensureOpen(ZipFileSystem.java:1193)
        at jdk.zipfs/jdk.nio.zipfs.ZipFileSystem.getFileAttributes(ZipFileSystem.java:348)
        at jdk.zipfs/jdk.nio.zipfs.ZipPath.getAttributes(ZipPath.java:740)
        at jdk.zipfs/jdk.nio.zipfs.ZipFileSystemProvider.readAttributes(ZipFileSystemProvider.java:292)
        at java.base/java.nio.file.Files.readAttributes(Files.java:1764)
        at java.base/java.nio.file.FileTreeWalker.getAttributes(FileTreeWalker.java:219)
        at java.base/java.nio.file.FileTreeWalker.visit(FileTreeWalker.java:276)
        at java.base/java.nio.file.FileTreeWalker.walk(FileTreeWalker.java:322)
        at java.base/java.nio.file.FileTreeIterator.<init>(FileTreeIterator.java:71)
        at java.base/java.nio.file.Files.walk(Files.java:3825)
        at io.micronaut.core.io.IOUtils.eachFile(IOUtils.java:102)
        at io.micronaut.core.io.service.SoftServiceLoader.computeServiceTypeNames(SoftServiceLoader.java:277)
        at io.micronaut.core.io.service.SoftServiceLoader.access$1100(SoftServiceLoader.java:68)
        at io.micronaut.core.io.service.SoftServiceLoader$MicronautMetaServicesLoader.compute(SoftServiceLoader.java:565)
        at java.base/java.util.concurrent.RecursiveAction.exec(RecursiveAction.java:189)
        at java.base/java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290)
        at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(ForkJoinPool.java:1020)
        at java.base/java.util.concurrent.ForkJoinPool.scan(ForkJoinPool.java:1656)
        at java.base/java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1594)
        at java.base/java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:183)

Refactor code around file system to synchronously access file system when using JAR. Fixes grails/grails-core#12589

puneetbehl · 2022-06-28T12:10:58Z

I think I have fixed one part of the problem where you won't see exceptions such as java.nio.file.FileSystemAlreadyExistsException. However, I am still debugging the another error which is:

io.micronaut.context.exceptions.NoSuchBeanException: No bean of type [io.micronaut.context.event.ApplicationEventPublisher<io.micronaut.context.event.StartupEvent>] exists. Make sure the bean is not disabled by bean requirements (enable trace logging for 'io.micronaut.context.condition' to check) and if the bean is enabled then ensure the class is declared a bean and annotation processing is enabled (for Java and Kotlin the 'micronaut-inject-java' dependency should be configured as an annotation processor).
        at io.micronaut.context.DefaultBeanContext.resolveBeanRegistration(DefaultBeanContext.java:2784)
        at io.micronaut.context.DefaultBeanContext.getBean(DefaultBeanContext.java:1596)
        at io.micronaut.context.DefaultBeanContext.getBean(DefaultBeanContext.java:865)
        at io.micronaut.context.BeanLocator.getBean(BeanLocator.java:94)
        at io.micronaut.context.DefaultBeanContext.publishEvent(DefaultBeanContext.java:1682)
        at io.micronaut.context.DefaultBeanContext.start(DefaultBeanContext.java:354)
        at io.micronaut.context.DefaultApplicationContext.start(DefaultApplicationContext.java:190)
        at grails.boot.GrailsApp.createApplicationContext(GrailsApp.groovy:184)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:305)
        at grails.boot.GrailsApp.run(GrailsApp.groovy:99)
        at grails.boot.GrailsApp.run(GrailsApp.groovy:485)
        at grails.boot.GrailsApp.run(GrailsApp.groovy:472)
        at foobar.Application.main(Application.groovy:11)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:49)
        at org.springframework.boot.loader.Launcher.launch(Launcher.java:108)
        at org.springframework.boot.loader.Launcher.launch(Launcher.java:58)
        at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:65)

It looks like io.micronaut.core.io.service.SoftServiceLoader is unable to pick BeanDefinitionReference from BOOT-INF/lib/micronaut-inject-3.5.1.jar!/META-INF/micronaut/io.micronaut.inject.BeanDefinitionReference which results in the above error.

codeconsole · 2022-06-29T03:06:49Z

@puneetbehl Does that have anything to do with the actual build process?

micronaut-projects/micronaut-gradle-plugin#406

I think I have fixed one part of the problem where you won't see exceptions such as java.nio.file.FileSystemAlreadyExistsException. However, I am still debugging the another error which is:
io.micronaut.context.exceptions.NoSuchBeanException: No bean of type [io.micronaut.context.event.ApplicationEventPublisher<io.micronaut.context.event.StartupEvent>] exists. Make sure the bean is not disabled by bean requirements (enable trace logging for 'io.micronaut.context.condition' to check) and if the bean is enabled then ensure the class is declared a bean and annotation processing is enabled (for Java and Kotlin the 'micronaut-inject-java' dependency should be configured as an annotation processor).
        at io.micronaut.context.DefaultBeanContext.resolveBeanRegistration(DefaultBeanContext.java:2784)
It looks like io.micronaut.core.io.service.SoftServiceLoader is unable to pick BeanDefinitionReference from BOOT-INF/lib/micronaut-inject-3.5.1.jar!/META-INF/micronaut/io.micronaut.inject.BeanDefinitionReference which results in the above error.

puneetbehl · 2022-06-30T03:42:13Z

I don't think it has anything to do with it. Basically the problem is with Micronaut 3.5 where it does not support reading BeanDefinitionReference from nested JAR. For example, the path is jar:file:/Users/pbehl/Downloads/foobar/build/libs/foobar-0.1.jar!/BOOT-INF/lib/micronaut-inject-3.5.3-SNAPSHOT.jar!/META-INF/micronaut/io.micronaut.inject.BeanDefinitionReference.

I am working on a Pull Request to support the same which I believe should fix the problem.

codeconsole · 2022-06-30T07:42:45Z

@puneetbehl thanks for the update!

codeconsole · 2022-07-05T16:47:29Z

@puneetbehl it sounds like they need you to provide them a way to replicate the issue

hayeskl · 2022-07-14T19:01:21Z

This is still broken when the injected bean references are stored in /BOOT-INF/classes i.e.

jar:file:/Users/khayes/foobar/build/libs/foobar-0.1.jar!/BOOT-INF/classes!/META-INF/micronaut/io.micronaut.inject.BeanDefinitionReference

jnunderwood · 2022-07-21T22:28:31Z

For my projects at least, v5.2.1 fixes this issue. Thanks.

puneetbehl · 2022-08-03T14:04:47Z

This should be resolved with 5.2.2

puneetbehl self-assigned this Jun 24, 2022

puneetbehl added the status: in progress label Jun 24, 2022

puneetbehl added this to the 5.2.1 milestone Jun 24, 2022

puneetbehl added a commit to micronaut-projects/micronaut-core that referenced this issue Jun 28, 2022

Update IOUtils.java

583948f

Refactor code around file system to synchronously access file system when using JAR. Fixes grails/grails-core#12589

puneetbehl mentioned this issue Jun 28, 2022

Update IOUtils.java micronaut-projects/micronaut-core#7620

Closed

puneetbehl mentioned this issue Jul 1, 2022

Support reading BeanDefinitionReference from nested JARS micronaut-projects/micronaut-core#7626

Closed

hayeskl mentioned this issue Jul 14, 2022

limit loadNestedJarUri calls to only embedded jar files micronaut-projects/micronaut-core#7694

Closed

puneetbehl closed this as completed Aug 3, 2022

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Runnable jar fails for 5.2.0 #12589

Runnable jar fails for 5.2.0 #12589

sbortman commented Jun 24, 2022 •

edited by puneetbehl

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spmcewen commented Jun 24, 2022 •

edited

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pangeaos commented Jun 25, 2022

codeconsole commented Jun 26, 2022 •

edited

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codeconsole commented Jun 26, 2022 •

edited

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jnunderwood commented Jun 27, 2022

puneetbehl commented Jun 28, 2022

codeconsole commented Jun 29, 2022

puneetbehl commented Jun 30, 2022

codeconsole commented Jun 30, 2022

codeconsole commented Jul 5, 2022

hayeskl commented Jul 14, 2022

jnunderwood commented Jul 21, 2022

puneetbehl commented Aug 3, 2022

Runnable jar fails for 5.2.0 #12589

Runnable jar fails for 5.2.0 #12589

Comments

sbortman commented Jun 24, 2022 • edited by puneetbehl Loading

Expected Behavior

Actual Behaviour

Steps To Reproduce

Environment Information

Example Application

Version

spmcewen commented Jun 24, 2022 • edited Loading

pangeaos commented Jun 25, 2022

codeconsole commented Jun 26, 2022 • edited Loading

codeconsole commented Jun 26, 2022 • edited Loading

jnunderwood commented Jun 27, 2022

puneetbehl commented Jun 28, 2022

codeconsole commented Jun 29, 2022

puneetbehl commented Jun 30, 2022

codeconsole commented Jun 30, 2022

codeconsole commented Jul 5, 2022

hayeskl commented Jul 14, 2022

jnunderwood commented Jul 21, 2022

puneetbehl commented Aug 3, 2022

sbortman commented Jun 24, 2022 •

edited by puneetbehl

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spmcewen commented Jun 24, 2022 •

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codeconsole commented Jun 26, 2022 •

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codeconsole commented Jun 26, 2022 •

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