Added PyPI release workflow; (hopefully) fixed missing website template

.github/workflows/pypi.yml

@@ -0,0 +1,47 @@
+# See https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/
+
+name: PyPI Release
+on:
+  workflow_dispatch:
+  release:
+    types: [published]
+
+jobs:
+  build:
+    name: Build distribution
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.x"
+      - name: Install pypa/build
+        run: python3 -m pip install build --user
+      - name: Build a binary wheel and a source tarball
+        run: python3 -m build
+      - name: Store the distribution packages
+        uses: actions/upload-artifact@v3
+        with:
+          name: python-package-distributions
+          path: dist/
+
+  publish-to-pypi:
+    name: Publish to PyPI
+    needs:
+      - build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/cocopye
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+    steps:
+      - name: Download all dists
+        uses: actions/download-artifact@v3
+        with:
+          name: python-package-distributions
+          path: dist/
+      - name: Publish distribution to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

MANIFEST.in

@@ -1,2 +1,3 @@
 recursive-include src/cocopye/ui/web/static *
+recursive-include src/cocopye/ui/web/templates *
 include src/cocopye/ui/config.toml

README.md

@@ -14,7 +14,7 @@ indices than existing tools.
 
 ## Getting started
 
-CoCoPyE is available via pip ~~and conda (conda-forge channel).~~ Coming soon. See the [project wiki](https://github.com/gobics/cocopye/wiki)
+CoCoPyE is available via pip and conda (conda-forge channel). See the [project wiki](https://github.com/gobics/cocopye/wiki)
 for installation and usage instructions.
 
 - [Quickstart](https://github.com/gobics/cocopye/wiki/Quickstart)
@@ -23,7 +23,7 @@ for installation and usage instructions.
 
 ### Online Demo
 
-You can test CoCoPyE without installation on [our project homepage](https://cocopye.uni-goettingen.de). Please note that the online demo can process only 
+You can test CoCoPyE without installation on ~~[our project homepage](https://cocopye.uni-goettingen.de)~~ ***coming soon***. Please note that the online demo can process only 
 one query genome per request and is less performant than a local installation. Therefore it is highly recommended to use the online
 version only for evaluation purposes and install CoCoPyE on your own machine for productive use.
 
@@ -36,7 +36,7 @@ or send an email to [[email protected]](mailto:[email protected]). ***(TODO: Rep
 
 ### API documentation
 
-You can find the API documentation of the CoCoPyE package on [https://gobics.github.com/cocopye](https://gobics.github.com/cocopye).
+You can find the API documentation of the CoCoPyE package on [https://gobics.github.io/cocopye](https://gobics.github.com/cocopye).
 
 ### License
 

pyproject.toml

@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "cocopye"
-version = "0.1.2"
+version = "0.1.3"
 authors = [
     { name = "Niklas Birth, Nicolina Leppich, Dr. Peter Meinicke" },
 ]