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✨✨✨ Megacomplex based models, full models (spectrotemporal), damped oscillations models (DOAS), 🧪 test result validation ✔️ #778

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merged 29 commits into from
Sep 16, 2021
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✨✨✨ Megacomplex based models, full models (spectrotemporal), damped oscillations models (DOAS), 🧪 test result validation ✔️ #778

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de4b949
🚇 Raised benchmark timeout to 5min (#724)
s-weigand Jun 26, 2021
ba53029
✨ Use xarray internally and move relations/constraints/penaltys to gl…
s-weigand Jul 4, 2021
a61a39d
🔧Add more QA tools for parts of glotaran (#739)
s-weigand Jul 4, 2021
a2539b5
✨ Feature: Megacomplex Models (#736)
s-weigand Jul 9, 2021
ffec6c7
🩹 Fix Performance Regressions (#740)
joernweissenborn Jul 15, 2021
0b86a15
✨ Feature: Full Models (#747)
joernweissenborn Jul 20, 2021
677a992
Small fix for baseline megacomplex (#762)
joernweissenborn Aug 7, 2021
8adfe8f
Refactor/spectral model (#763)
joernweissenborn Aug 12, 2021
c2bb87b
Fix/cli0.5 (#765)
joernweissenborn Aug 13, 2021
d2b297b
🩹Fix check_deprecations not showing deprecation warnings (#775)
s-weigand Aug 13, 2021
998bad5
✨ Damped Oscillation Megacomplex (#764)
joernweissenborn Aug 15, 2021
a464ec3
🔧 Fix interrogate usage (#781)
s-weigand Aug 20, 2021
b960a98
📚 Add docs for the CLI (#784)
s-weigand Aug 22, 2021
5e9eb22
🚇 Speedup PR benchmark (#785)
s-weigand Aug 22, 2021
dd0ce80
🩹 Update calls to clp_area_penalties where deprecated func is called …
jsnel Aug 25, 2021
a6a5a51
Improve ordering in k_matrix involved_compartments function (#788)
jsnel Aug 25, 2021
b281799
🩹 Fix and re-enable IRF Dispersion Test (#786)
jsnel Aug 26, 2021
6689a95
🩹 Fixed wrong value for model spec deprecation and spectral model (#795)
s-weigand Aug 29, 2021
9dc64af
Cleanup IRF Dispersion test PR #786
jsnel Aug 29, 2021
70a1205
Fix compartment ordering randomization due to use of set (#799)
jsnel Aug 31, 2021
fe7d75c
🩹 False positive model validation fail when combining multiple defaul…
s-weigand Sep 3, 2021
2a6b3e6
Improvements to application of clp_penalties (equal area) (#801)
jsnel Sep 4, 2021
5238409
🧪🚇 Add integration test result validation (#754)
s-weigand Sep 5, 2021
902454e
🔧 Use flake8-print in pre-commit (#772)
s-weigand Sep 7, 2021
9d49c12
Fix codacy issues on staging (#806)
jsnel Sep 9, 2021
9892b6e
🧪 Added more tools from the 'pygrep-hooks' pre-commit hook (#805)
s-weigand Sep 11, 2021
ae63eb4
🩹 Fix coherent artifact crash for index dependent models (#808)
s-weigand Sep 11, 2021
0f36985
🔧 Added sourcery config file (#811)
s-weigand Sep 11, 2021
af7addc
♻️ Refactor model.from_dict to parse megacomplex_type from dict and a…
jsnel Sep 16, 2021
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54 changes: 30 additions & 24 deletions .github/CODEOWNERS
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Validating CODEOWNERS rules …
Original file line number Diff line number Diff line change
Expand Up @@ -12,49 +12,55 @@
# This should make it easy to add new rules without breaking existing ones.

# Global rule:
* @glotaran/admins
* @glotaran/admins

# tooling
/.github @glotaran/admins @glotaran/maintainers
/.* @glotaran/admins @glotaran/maintainers
/*.y*ml @glotaran/admins @glotaran/maintainers
/*.ini @glotaran/admins @glotaran/maintainers
/*.toml @glotaran/admins @glotaran/maintainers
/*.txt @glotaran/admins @glotaran/maintainers
LICENSE @glotaran/pyglotaran_creators
/.github @glotaran/admins @glotaran/maintainers
/.* @glotaran/admins @glotaran/maintainers
/*.y*ml @glotaran/admins @glotaran/maintainers
/*.ini @glotaran/admins @glotaran/maintainers
/*.toml @glotaran/admins @glotaran/maintainers
/*.txt @glotaran/admins @glotaran/maintainers
LICENSE @glotaran/pyglotaran_creators

# docs
/docs/**/*.rst @glotaran/maintainers @glotaran/pyglotaran_creators
# /docs/**/*.md @glotaran/maintainers @glotaran/pyglotaran_creators
/docs/**/*.rst @glotaran/maintainers @glotaran/pyglotaran_creators
# /docs/**/*.md @glotaran/maintainers @glotaran/pyglotaran_creators

# analysis module:
/glotaran/analysis/ @jsnel @joernweissenborn
/glotaran/analysis/ @jsnel @joernweissenborn

# builtin module:
/glotaran/builtin/io/* @glotaran/admins
/glotaran/builtin/io/ascii @jsnel @glotaran/maintainers
/glotaran/builtin/io/csv @glotaran/maintainers
/glotaran/builtin/io/netCDF @glotaran/maintainers
/glotaran/builtin/io/sdt @glotaran/maintainers
/glotaran/builtin/models/ @jsnel @joernweissenborn
/glotaran/builtin/io/* @glotaran/admins
/glotaran/builtin/io/ascii @jsnel @glotaran/maintainers
/glotaran/builtin/io/csv @glotaran/maintainers
/glotaran/builtin/io/netCDF @glotaran/maintainers
/glotaran/builtin/io/sdt @glotaran/maintainers
/glotaran/builtin/megacomplexes/ @jsnel @joernweissenborn

# cli
/glotaran/cli/ @jsnel @glotaran/admins
/glotaran/cli/ @jsnel @glotaran/admins

# examples
/glotaran/examples/ @jsnel @glotaran/maintainers
/glotaran/examples/ @jsnel @glotaran/maintainers

# io
/glotaran/io/ @jsnel @glotaran/maintainers
/glotaran/io/ @jsnel @glotaran/maintainers

# model
/glotaran/model/ @jsnel @glotaran/admins @joernweissenborn
/glotaran/model/ @jsnel @glotaran/admins @joernweissenborn

# parameter
/glotaran/parameter/ @jsnel @glotaran/admins @joernweissenborn
/glotaran/parameter/ @jsnel @glotaran/admins @joernweissenborn

# plugin_system
glotaran/plugin_system @s-weigand @glotaran/admins
glotaran/plugin_system @s-weigand @glotaran/admins

# deprecation framework and tests
glotaran/deprecation @s-weigand @glotaran/admins

# utility function
glotaran/utils @s-weigand @glotaran/admins

# project
/glotaran/project/ @jsnel @glotaran/admins
/glotaran/project/ @jsnel @glotaran/admins
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