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BioTek: refine field and channel name regexes #158

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merged 2 commits into from
Sep 23, 2022
Merged

BioTek: refine field and channel name regexes #158

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9be8c76
BioTek: refine field and channel name regexes
melissalinkert Jul 28, 2022
f3fe218
Add new unit tests for BioTekReader
melissalinkert Sep 1, 2022
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4 changes: 2 additions & 2 deletions src/main/java/com/glencoesoftware/bioformats2raw/BioTekReader.java
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Original file line number Diff line number Diff line change
Expand Up @@ -60,8 +60,8 @@ public class BioTekReader extends FormatReader {
private static final Logger LOGGER =
LoggerFactory.getLogger(BioTekReader.class);
private static final String BIOTEK_MAGIC = "BTIImageMetaData";
private static final String WELL_REGEX = "([A-Z]{1,2})(\\d{1,2})_(\\d+)";
private static final String ALPHANUM = "([A-Za-z0-9 ]+)";
private static final String WELL_REGEX = "([A-Z]{1,2})(\\d{1,2})_(-?\\d+)";
private static final String ALPHANUM = "([A-Za-z0-9 ,\\[\\]]+)";
private static final String SUFFIX = ".tif[f]?";
private static final String TIFF_REGEX_A =
WELL_REGEX + "_(\\d+)_(\\d+)_" + ALPHANUM + "_(\\d+)" + SUFFIX;
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