Merge pull request #1 from ESCOMP/master

update my ctsm fork to latest

.gitattributes

@@ -0,0 +1,6 @@
+*.svg filter=lfs diff=lfs merge=lfs -text
+*.png filter=lfs diff=lfs merge=lfs -text
+*.jpg filter=lfs diff=lfs merge=lfs -text
+*.jpeg filter=lfs diff=lfs merge=lfs -text
+*.gif filter=lfs diff=lfs merge=lfs -text
+*.pdf filter=lfs diff=lfs merge=lfs -text

.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1,5 @@
+blank_issues_enabled: true
+contact_links:
+  - name: CESM forums
+    url: https://xenforo.cgd.ucar.edu/cesm/
+    about: For support with model use, troubleshooting, etc., please use the CTSM forum

.gitignore

@@ -17,6 +17,23 @@ manage_externals.log
 *.swp
 *~
 
+# vim files (from https://github.com/github/gitignore/blob/master/Global/Vim.gitignore)
+# Swap
+[._]*.s[a-v][a-z]
+[._]*.sw[a-p]
+[._]s[a-rt-v][a-z]
+[._]ss[a-gi-z]
+[._]sw[a-p]
+# Session
+Session.vim
+# Temporary
+.netrwhist
+# (removed *~ because it is listed above)
+# Auto-generated tag files
+tags
+# Persistent undo
+[._]*.un~
+
 # mac files
 .DS_Store
 
@@ -73,6 +90,9 @@ clm.input_data_list
 clm.input_data_list.previous
 *.stdout.txt.o*
 
+# mksurfdata unit tests
+unit_test_build
+
 # Tools executables
 /tools/mksurfdata_map/mksurfdata_map
 /tools/mkprocdata_map/mkprocdata_map

.lfsconfig

@@ -0,0 +1,2 @@
+[lfs]
+        fetchexclude = *

Externals.cfg

@@ -7,30 +7,30 @@ required = True
 [cism]
 local_path = components/cism
 protocol = git
-repo_url = https://github.com/ESCOMP/cism-wrapper
+repo_url = https://github.com/ESCOMP/CISM-wrapper
 tag = cism2_1_68
 externals = Externals_CISM.cfg
 required = True
 
 [rtm]
 local_path = components/rtm
 protocol = git
-repo_url = https://github.com/ESCOMP/rtm
-tag = rtm1_0_70
+repo_url = https://github.com/ESCOMP/RTM
+tag = rtm1_0_71
 required = True
 
 [mosart]
 local_path = components/mosart
 protocol = git
-repo_url = https://github.com/ESCOMP/mosart
-tag = mosart1_0_35
+repo_url = https://github.com/ESCOMP/MOSART
+tag = mosart1_0_36
 required = True
 
 [cime]
 local_path = cime
 protocol = git
 repo_url = https://github.com/ESMCI/cime
-tag = cime5.8.15
+tag = cime5.8.19
 externals = ../Externals_cime.cfg
 required = True
 

Externals_CLM.cfg

@@ -1,15 +1,15 @@
 [fates]
 local_path = src/fates
 protocol = git
-repo_url = https://github.com/NCAR/fates-release
-tag = fates_s1.8.1_a3.0.0_rev2
+repo_url = https://github.com/NGEET/fates
+tag = sci.1.30.0_api.8.0.0
 required = True
 
 [PTCLM]
 local_path = tools/PTCLM
 protocol = git
-repo_url = https://github.com/ESCOMP/ptclm
-tag = PTCLM2_180611
+repo_url = https://github.com/ESCOMP/PTCLM
+tag = PTCLM2_20200121
 required = True
 
 [externals_description]

Externals_cime.cfg

@@ -1,5 +1,5 @@
 [cmeps]
-hash = 181ff1ed9dfb279e619e8a2173f43baf7bf1dce3
+hash = 253f612acae07b2b1dc73c84f1bb30b8e1b86ddd
 protocol = git
 repo_url = https://github.com/ESCOMP/CMEPS.git
 local_path = src/drivers/nuopc/

README

@@ -135,6 +135,10 @@ tools/ncl_scripts  ------------ Directory of NCL and perl scripts to do various
                                 tasks. Most notably to plot perturbation error growth
                                 testing and to extract regional information from
                                 global datasets for single-point/regional simulations.
+tools/contrib ----------------- Miscellansous useful scripts for pre and post processing
+                                as well as case management of CTSM. These scripts are
+                                contributed by users and may not be as well tested or
+                                supported as other tools.
 
 
 =============================================================================================

README.rst

@@ -2,6 +2,9 @@
 CTSM
 ====
 
+.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3739617.svg
+   :target: https://doi.org/10.5281/zenodo.3739617
+
 The Community Terrestrial Systems Model.
 
 This includes the Community Land Model (CLM5.0 and CLM4.5) of the Community Earth System Model.
@@ -23,6 +26,11 @@ and
 
 https://github.com/ESCOMP/ctsm/wiki/Recommended-git-setup
 
+For support with model use, troubleshooting, etc., please use the CTSM forum (or other
+appropriate forum) here:
+
+https://xenforo.cgd.ucar.edu/cesm/
+
 To get updates on CTSM tags and important notes on CTSM developments
 join our low traffic email list: