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Add lobata configuration to E3SM #5

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glemieux opened this issue Jul 18, 2022 · 5 comments
Closed

Add lobata configuration to E3SM #5

glemieux opened this issue Jul 18, 2022 · 5 comments

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@glemieux
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Branch: lobata_configuration
Issue on fates repo: NGEET/fates#881 (comment)
@glemieux
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PR to update CIME: E3SM-Project#5088

@glemieux
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glemieux commented Jul 25, 2022 •
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CIME updated to cime4.0.46 with E3SM-Project@12bda05.

  • Update lobata_configuration with master and run test case

Test case is failing to build on the e3sm build step due to not being able to find the environment variables for netcdf. This is odd to me as the previous build logs (pio, mct, etc) have the paths for netcdf include files listed correctly. Comparing the difference between cime6.0.40 (ctsm) and cime6.0.46 (e3sm) there doesn't appear to be anything in cime that is causing this issue, so I'm guessing this has to do with some differences in the way modules are handled with e3sm versus ctsm. Something to do with Cmake?

@glemieux
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glemieux commented Jul 25, 2022 •
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  • Fix build issue

Work around was to revert the cmake config file to include the commands to set the CMAKE variables to pass the environment variables set by modules.

  • Run test case on lobata

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glemieux commented Jul 25, 2022 •
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Drafted PR: E3SM-Project#5094.

  • Run land developer tests

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Closed per E3SM-Project#5094

glemieux pushed a commit that referenced this issue Jan 31, 2023
@sshu88
Merge pull request #5 from rgknox/fatesluc_cbasedhrv_v2
1b3257f 
fixes for nutrient enabled fates
glemieux pushed a commit that referenced this issue Jun 13, 2023
@ambrad
Crusher: Work around tcmalloc issue.
3791fab 
cee/15.0.0 with GPU MPI buffers can crash in a system lib like this:

#4  0x00007fffe159e35b in (anonymous namespace)::do_free_with_callback(void*, void (*)(void*)) [clone .constprop.0] () from /opt/cray/pe/cce/15.0.0/cce/x86_64/lib/libtcmalloc_minimal.so.1
#5  0x00007fffe15a8f16 in tc_free () from /opt/cray/pe/cce/15.0.0/cce/x86_64/lib/libtcmalloc_minimal.so.1
#6  0x00007fffe99c2bcd in _dlerror_run () from /lib64/libdl.so.2
#7  0x00007fffe99c2481 in dlopen@@GLIBC_2.2.5 () from /lib64/libdl.so.2
#8  0x00007fffea7bce42 in _ad_cray_lock_init () from /opt/cray/pe/lib64/libmpi_cray.so.12
#9  0x00007fffed7eb37a in call_init.part () from /lib64/ld-linux-x86-64.so.2
#10 0x00007fffed7eb496 in _dl_init () from /lib64/ld-linux-x86-64.so.2
#11 0x00007fffed7dc58a in _dl_start_user () from /lib64/ld-linux-x86-64.so.2
#12 0x0000000000000001 in ?? ()
#13 0x00007fffffff42e7 in ?? ()
#14 0x0000000000000000 in ?? ()

Work around this by using cee/14.0.3.
glemieux pushed a commit that referenced this issue Nov 6, 2023
@eclare108213
Merge pull request #5 from eclare108213/update_E3SM_3
d913a2b 
Update development branch to E3SM master
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@glemieux