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Workflow file for this run
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name: GLAMOD marine-processing Testing Suite | |
on: | |
push: | |
branches: | |
- "*" | |
pull_request: | |
branches: | |
- "*" | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
name: py${{ matrix.python-version }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest"] | |
# Bookend python versions | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: Set environment variables | |
run: | | |
echo "CONDA_ENV_FILE=ci/requirements/environment.yml" >> $GITHUB_ENV | |
echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
- name: Create conda environment | |
uses: mamba-org/provision-with-micromamba@main | |
with: | |
cache-downloads: true | |
cache-downloads-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
micromamba-version: 'latest' | |
environment-file: ci/requirements/environment.yml | |
extra-specs: | | |
python=${{ matrix.python-version }} | |
- name: Install cdm reader mapper toolbox | |
run: | | |
python -m pip install --no-deps -e . | |
- name: Version info | |
run: | | |
conda info -a | |
conda list | |
- name: Import marine_processing toolbox | |
run: | | |
python -c "import glamod_marine_processing" | |
- name: Run tests | |
timeout-minutes: 10 | |
run: python -u -m pytest | |
--cov=glamod_marine_processing | |
--cov-report=xml | |
--junitxml=test-results/${{ runner.os }}-${{ matrix.python-version }}.xml | |
- name: Upload code coverage to Codecov | |
uses: codecov/[email protected] | |
with: | |
token: ${{ secrets.CODECOV_TOKEN}} | |
file: ./coverage.xml | |
flags: unittests | |
env_vars: RUNNER_OS,PYTHON_VERSION | |
name: codecov-umbrella | |
fail_ci_if_error: false |