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PAINTOR v2.0 Description
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gkichaev committed Jun 8, 2015
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Expand Up @@ -34,13 +34,13 @@ Download the latest [version](https://github.com/gkichaev/PAINTOR_FineMapping/re

This will create an executable "PAINTOR". Sample data is provided with the package. To test that the installation worked properly, type:

`$ ./PAINTOR -input SampleData/input.files -in SampleData/ -out SampleData/ -Zhead Zscore.p1,Zscore.p2,Zscore.p3 -LDname LD.p1,LD.p2,LD.p3 -c 2 -annotations Coding,DHS
`$ ./PAINTOR -input SampleData/input.files -in SampleData/ -out SampleData/ -Zhead Zscore.p1,Zscore.p2,Zscore.p3 -LDname LD.p1,LD.p2,LD.p3 -c 2 -annotations Coding,DHS i`

If everything worked correctly the final log-likelihod should be: `-2129.21235`

For quick start simply type:

`$ ./PAINTOR
`$ ./PAINTOR`

For detailed information on input files and command line flags see the user manual provided.

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