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Collaboration

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Robert J. Gifford edited this page Oct 9, 2024 · 1 revision

Hosting of GLUE projects in an openly accessible online version control system (e.g., GitHub) provides a mechanism for managing their ongoing development by multiple collaborators, following practices established in the software industry.

GLUE by Robert J. Gifford Lab.

For questions, issues, or feedback, please open an issue on the GitHub repository.

GLUE USER GUIDE

Overview

  1. Home
  2. Docker Installation
  3. Native Installation
  4. Usage Overview

GLUE Concepts

  1. Project Data Model
  2. Schema Extensions
  3. Modules
  4. Alignments
  5. Variations
  6. Scripting Layer
  7. Freemarker Templates

GLUE User Guide

  1. Example GLUE Project
  2. Command Line Interpreter
  3. Build Your Own Project
  4. Querying the GLUE Database
  5. Working With Deep Sequencing Data
  6. Invoking GLUE as a Unix Command
  7. Known Issues and Fixes

Reference Documentation

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference

Gifford Lab GLUE Projects

  1. Overview
  2. Hepatitis Viruses
  3. Arboviruses
  4. Respiratory Viruses
  5. Animal Viruses
  6. Spillover Viruses
  7. Virus Diversity
  8. Retroviruses
  9. Paleovirology
  10. Transposons
  11. Host Genes
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