This repository contains scripts to reproduce the analysis of Plant TDP1 (Tyrosyl-DNA Phosphodiesterase 1): A Phylogenetic Perspective and Gene Expression Data Mining
- data/ contains fasta of protein sequences and an excel file with useful metadata
- msa/ contains script to produce MSAs
- trees/ has scripts to analyze output from MEGAX and visualizations
- Mrbayes/ has visual analysis of output from MrBAyes
- gsds-meme/ contains pictures obtained with gsds 2.0 and MEME 5.0.5