make encounter of pair of records with same locus ID for distance com… #602
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| name: Python tests, pipeline | |
| on: [push, pull_request] | |
| jobs: | |
| tests: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11"] | |
| os: [ubuntu-20.04, ubuntu-22.04] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Poetry | |
| uses: snok/install-poetry@v1 # v1.3.4 at time of adoption | |
| with: | |
| poetry-version: "1.7.1" | |
| - uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ~/.cache/pypoetry/virtualenvs | |
| ~/.cache/pytest | |
| key: ${{ runner.os }}-poetry-tests-${{ hashFiles('poetry.lock') }} | |
| - name: Install project | |
| run: poetry install --no-interaction --sync -E pipeline -E test | |
| - name: Run PIPELINE unit tests on Python ${{ matrix.python-version }} | |
| run: poetry run pytest -vv tests/pipeline |