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release 0.2.0 finalisation
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vreuter committed Apr 14, 2024
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2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -4,7 +4,7 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [Unreleased]
## [0.2.0] - 2024-04-14

### Added
* Visualisation of [nuclear masks](./looptrace_napari/nuclei_reader.py)
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1 change: 1 addition & 0 deletions docs/user_docs/locus-spots.md
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To visualise the locus-specific spots masks, you need to __drag-and-drop files__ into an active Napari window.
1. First, drag one of the `PXXXX.zarr` files--from the `locus_spots_visualisation` subfolder in your analysis folder from `looptrace`--into Napari.
1. Choose to open the ZARR with the Napari native plugin(s) / readers, not this plugin's.
1. Select "continuous" for the value of the "auto-contrast" option in the upper-left panel of the Napari window.
1. Second, drag a the corresponding (by field of view) pair of `*qcpass.csv` and `*qcfail.csv` files into Napari.
1. Choose to open these QC pass/fail CSVs with this plugin rather than Napari builtins.

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