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Add more genomes
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cchlanger committed May 25, 2023
1 parent e9fd588 commit a522b0c
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Showing 8 changed files with 217 additions and 0 deletions.
49 changes: 49 additions & 0 deletions back_end/data/arms.hg38
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chrom,start,end
chr1,0,123479591
chr1,123479591,248956422
chr2,0,93139351
chr2,93139351,242193529
chr3,0,92214016
chr3,92214016,198295559
chr4,0,50728006
chr4,50728006,190214555
chr5,0,48272853
chr5,48272853,181538259
chr6,0,59191911
chr6,59191911,170805979
chr7,0,59848836
chr7,59848836,159345973
chr8,0,44955504
chr8,44955504,145138636
chr9,0,44454096
chr9,44454096,138394717
chr10,0,40640101
chr10,40640101,133797422
chr11,0,52751711
chr11,52751711,135086622
chr12,0,35977329
chr12,35977329,133275309
chr13,0,17025624
chr13,17025624,114364328
chr14,0,17086761
chr14,17086761,107043718
chr15,0,18404463
chr15,18404463,101991189
chr16,0,37288413
chr16,37288413,90338345
chr17,0,24714921
chr17,24714921,83257441
chr18,0,18161052
chr18,18161052,80373285
chr19,0,25844927
chr19,25844927,58617616
chr20,0,28237290
chr20,28237290,64444167
chr21,0,11890184
chr21,11890184,46709983
chr22,0,14004553
chr22,14004553,50818468
chrX,0,60509060
chrX,60509060,156040895
chrY,0,10430491
chrY,10430491,57227415
43 changes: 43 additions & 0 deletions back_end/data/arms.mm9
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@@ -0,0 +1,43 @@
chrom,start,end
chr1,0,98597716
chr1,98597716,197195432
chr2,0,90874043
chr2,90874043,181748087
chr3,0,79799891
chr3,79799891,159599783
chr4,0,77815060
chr4,77815060,155630120
chr5,0,76268629
chr5,76268629,152537259
chr6,0,74758518
chr6,74758518,149517037
chr7,0,76262276
chr7,76262276,152524553
chr8,0,65869435
chr8,65869435,131738871
chr9,0,62038086
chr9,62038086,124076172
chr10,0,64996627
chr10,64996627,129993255
chr11,0,60921928
chr11,60921928,121843856
chr12,0,60628765
chr12,60628765,121257530
chr13,0,60142156
chr13,60142156,120284312
chr14,0,62597432
chr14,62597432,125194864
chr15,0,51747487
chr15,51747487,103494974
chr16,0,49159575
chr16,49159575,98319150
chr17,0,47636325
chr17,47636325,95272651
chr18,0,45386015
chr18,45386015,90772031
chr19,0,30671215
chr19,30671215,61342430
chrX,0,83325148
chrX,83325148,166650296
chrY,0,7951277
chrY,7951277,15902555
35 changes: 35 additions & 0 deletions back_end/data/arms.sacCer3
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
chrom,start,end
chrIV,0,765966
chrIV,765966,1531933
chrXV,0,545645
chrXV,545645,1091291
chrVII,0,545470
chrVII,545470,1090940
chrXII,0,539088
chrXII,539088,1078177
chrXVI,0,474033
chrXVI,474033,948066
chrXIII,0,462215
chrXIII,462215,924431
chrII,0,406592
chrII,406592,813184
chrXIV,0,392166
chrXIV,392166,784333
chrX,0,372875
chrX,372875,745751
chrXI,0,333408
chrXI,333408,666816
chrV,0,288437
chrV,288437,576874
chrVIII,0,281321
chrVIII,281321,562643
chrIX,0,219944
chrIX,219944,439888
chrIII,0,158310
chrIII,158310,316620
chrVI,0,135080
chrVI,135080,270161
chrI,0,115109
chrI,115109,230218
chrM,0,42889
chrM,42889,85779
19 changes: 19 additions & 0 deletions back_end/data/arms.tak1
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
chrom,start,end
chr1,0,15292086
chr1,15292086,30584173
chr2,0,14821713
chr2,14821713,29643427
chr3,0,13571170
chr3,13571170,27142341
chr4,0,13494025
chr4,13494025,26988051
chr5,0,13397007
chr5,13397007,26794015
chr6,0,11930780
chr6,11930780,23861560
chr7,0,10981764
chr7,10981764,21963529
chr8,0,10657276
chr8,10657276,21314552
chrV,0,3771857
chrV,3771857,7543715
24 changes: 24 additions & 0 deletions back_end/data/hg38.chrom.sizes
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chr1 248956422
chr2 242193529
chr3 198295559
chr4 190214555
chr5 181538259
chr6 170805979
chr7 159345973
chr8 145138636
chr9 138394717
chr10 133797422
chr11 135086622
chr12 133275309
chr13 114364328
chr14 107043718
chr15 101991189
chr16 90338345
chr17 83257441
chr18 80373285
chr19 58617616
chr20 64444167
chr21 46709983
chr22 50818468
chrX 156040895
chrY 57227415
21 changes: 21 additions & 0 deletions back_end/data/mm9.chrom.sizes
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
chr1 197195432
chr2 181748087
chr3 159599783
chr4 155630120
chr5 152537259
chr6 149517037
chr7 152524553
chr8 131738871
chr9 124076172
chr10 129993255
chr11 121843856
chr12 121257530
chr13 120284312
chr14 125194864
chr15 103494974
chr16 98319150
chr17 95272651
chr18 90772031
chr19 61342430
chrX 166650296
chrY 15902555
17 changes: 17 additions & 0 deletions back_end/data/sacCer3.chrom.sizes
Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
chrIV 1531933
chrXV 1091291
chrVII 1090940
chrXII 1078177
chrXVI 948066
chrXIII 924431
chrII 813184
chrXIV 784333
chrX 745751
chrXI 666816
chrV 576874
chrVIII 562643
chrIX 439888
chrIII 316620
chrVI 270161
chrI 230218
chrM 85779
9 changes: 9 additions & 0 deletions back_end/data/tak1.chrom.sizes
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
chr1 30584173
chr2 29643427
chr3 27142341
chr4 26988051
chr5 26794015
chr6 23861560
chr7 21963529
chr8 21314552
chrV 7543715

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