Split python packages needed for RTD documentation builds out of the GCPy conda environment and into a separate environment; remove awscli #295
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docs/environment_files/read_the_docs_environment.yml - New Mamba/Conda environment file containing pegged package versions for ReadTheDocs documentation. Uses Python 12 and more recent package versions, to avoid dependabot warnings. docs/environment_files/environment.yml docs/environment_files/testing.yml - Removed RTD dependencies from these environment files .github/workflows/build-rtd-environment.yml - GitHub action to test if we can build a Mamba/Conda environment from read_the_docs_environment.yml CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
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category: Feature Request
.github/workflows/build-*-environment.yml - Set "cache_environment: false". This will prevent warnings that say that caches cannot be created. This can happen if multiple instances of setup-micromamba are running (such as we have). Signed-off-by: Bob Yantosca <[email protected]>
This was causing the CodeQL GitHub action not to run. Signed-off-by: Bob Yantosca <[email protected]>
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topic: User Environment
docs/environment_files/gcpy_environment.yml - Renamed from docs/environment_files/environment.yml - Removed awscli, since v2 is not available via PyPI anymore - Updated comment header docs/environment_files/gcpy_requirements.txt - Added GCPy dependencies from gcpy_environment.yml here, but in PyPi "requirements.txt" form. docs/enviroment_files/read_the_docs_environment.yml - Updated comment header docs/environment_files/read_the_docs_requirements.txt - Added ReadTheDocs dependencies from gcpy_environment.yml here, but in PyPi "requirements.txt" form. docs/environment_files/environment.yml docs/environment_files/requirements.txt - Removed environment.yml - Symbolic link to docs/environment_files/gcpy_environment.yml requirements.txt - Symbolic link to docs/environment_files/gcpy_requirements.txt CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
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Also see #299. The installation of geoschem-gcpy via pip fails due to the boneheaded decision by AWS not to publish awscli versions newer than 1.3.2 on PyPI. In this PR I have also updated the environment files to remove awscli from the list of GCPy dependencies. |
.github/workflows/build-gcpy-environment.yml - Changed filename "docs/environment_files/environment.yml" to "docs/environment_files.gcpy_environment.yml" Signed-off-by: Bob Yantosca <[email protected]>
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lizziel
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Feb 5, 2024
CHANGELOG.md
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| ### Fixed | ||
| - CS inquiry functions in `gcpy/cstools.py` now work properly for `xr.Dataset` and `xr.DataArray` objects | ||
| - Prevent an import error by using `seaborn-v0_8-darkgrid` in`gcpy/benchmark/modules/benchmark_models_vs_obs.py` | ||
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| ### Removed | ||
| - Python packages for RTD documenation builds from `docs/environment_files/environment.yml` |
CHANGELOG.md - Moved a sentence about the RTD environment from the "Removed" section to the "Changed" section. Signed-off-by: Bob Yantosca <[email protected]>
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Feb 6, 2024
This merge brings the "dev" branch (as of the merge with PR #295) into the feature/update-model-vs-obs (which far behind). Signed-off-by: Bob Yantosca <[email protected]>
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Name and Institution (Required)
Name: Bob Yantosca
Institution: Harvard + GCST
Confirm you have reviewed the following documentation
Describe the update
This PR does the following:
Remove Python packages needed for ReadTheDocs documentation builds from
docs/environment_files/environment.ymland adds them into a separate environment filedocs/environment_files/read_the_docs_environment.yml.Adds a GitHub action
build-rtd-environmentto test if a Mamba/Conda environment can be built fromread_the_docs_environment.yml.Expected changes
This is a zero-diff update w/r/t GCPy's plotting/computational functionality. It should also provide no difference w/r/t the ReadTheDocs documentation build. I have confirmed that the RTD documentation for GCPy can be built with the newer package versions.
Related Github Issue(s)
N/A