Update TransportTracer species names following updates made in GEOS-C…

…hem 14.2.0 Also renamed PassiveTracers benchmark category to TransportTracers. Signed-off-by: Melissa Sulprizio <[email protected]>
geoschem · May 31, 2023 · 606ef01 · 606ef01
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -21,6 +21,8 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 - The GitHub PR template is now named `./github/PULL_REQUEST_TEMPLATE.md`
 - Now specify package `requests-2.31.0` in `environment.py` (fixes a security issue)
 - Updated badge links in `README.md`
+- Updated species_database.yml for consistency with GEOS-Chem 14.2.0
+- Renamed TransportTracers species in `benchmark_categories.yml` and in documentation
 
 ### Fixed
 - Generalized test for GCHP or GCClassic restart file in `regrid_restart_file.py`

diff --git a/docs/source/Plotting.rst b/docs/source/Plotting.rst
@@ -967,10 +967,9 @@ species categories is denoted in :file:`benchmark_categories.yml`
          Peroxides: MP
       Sulfur: SOx, DMS, OCS, SO2, SO4
    TransportTracersBenchmark:
-      RnPbBeTracers: Rn222, Pb210, Pb210Strat, Be7, Be7Strat, Be10, Be10Strat
-      PassiveTracers: PassiveTracer, SF6Tracer, CH3ITracer, COAnthroEmis25dayTracer,
-          COAnthroEmis50dayTracer, COUniformEmis25dayTracer, GlobEmis90dayTracer,
-          NHEmis90dayTracer, SHEmis90dayTracer
+      RnPbBeTracers: Rn222, Pb210, Pb210s, Be7, Be7s, Be10, Be10s
+      TransportTracers: PassiveTracer, SF6, CH3I, aoa, aoa_bl, aoa_nh,
+          CO_25, CO_50, e90, e90_s, e90_n, st80_25, stOX
 
    """
 

diff --git a/gcpy/benchmark_categories.yml b/gcpy/benchmark_categories.yml
@@ -220,22 +220,26 @@ TransportTracersBenchmark:
     RnPbBeTracers:
       - Rn222
       - Pb210
-      - Pb210Strat
+      - Pb210s
       - Be7
-      - Be7Strat
+      - Be7s
       - Be10
-      - Be10Strat
-  PassiveTracers:
-    PassiveTracers:
+      - Be10s
+  TransportTracers:
+    TransportTracers:
       - PassiveTracer
-      - SF6Tracer
-      - CH3ITracer
-      - COAnthroEmis25dayTracer
-      - COAnthroEmis50dayTracer
-      - COUniformEmis25dayTracer
-      - GlobEmis90dayTracer
-      - NHEmis90dayTracer
-      - SHEmis90dayTracer
+      - SF6
+      - CH3I
+      - aoa
+      - aoa_bl
+      - aoa_nh
+      - CO_25
+      - CO_50
+      - e90
+      - e90_n
+      - e90_s
+      - st80_25
+      - stOX
   WetLossConv:
     WetLossConv:
       - Pb210