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Deploying to main from @ geometric-intelligence/neurometry@564b576 🚀
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ninamiolane committed Nov 26, 2024
1 parent fb0a817 commit 06bf971
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Showing 78 changed files with 2,962 additions and 3,944 deletions.
4 changes: 2 additions & 2 deletions neurometry/.buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 3eb9816d843cc185e400b28db5d02cb7
# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
config: ebea7b7143e1ee20ad1e7bf30501b59d
tags: 645f666f9bcd5a90fca523b33c5a78b7
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1,272 changes: 663 additions & 609 deletions neurometry/_sources/notebooks/01_methods_create_synthetic_data.ipynb.txt

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15 changes: 2 additions & 13 deletions neurometry/_static/basic.css
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@@ -1,12 +1,5 @@
/*
* basic.css
* ~~~~~~~~~
*
* Sphinx stylesheet -- basic theme.
*
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/

/* -- main layout ----------------------------------------------------------- */
Expand Down Expand Up @@ -115,15 +108,11 @@ img {
/* -- search page ----------------------------------------------------------- */

ul.search {
margin: 10px 0 0 20px;
padding: 0;
margin-top: 10px;
}

ul.search li {
padding: 5px 0 5px 20px;
background-image: url(file.png);
background-repeat: no-repeat;
background-position: 0 7px;
padding: 5px 0;
}

ul.search li a {
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7 changes: 0 additions & 7 deletions neurometry/_static/doctools.js
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@@ -1,12 +1,5 @@
/*
* doctools.js
* ~~~~~~~~~~~
*
* Base JavaScript utilities for all Sphinx HTML documentation.
*
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
"use strict";

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7 changes: 0 additions & 7 deletions neurometry/_static/language_data.js
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/*
* language_data.js
* ~~~~~~~~~~~~~~~~
*
* This script contains the language-specific data used by searchtools.js,
* namely the list of stopwords, stemmer, scorer and splitter.
*
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/

var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
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2 changes: 1 addition & 1 deletion neurometry/_static/scripts/bootstrap.js.map

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3 changes: 3 additions & 0 deletions neurometry/_static/scripts/fontawesome.js

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1 change: 1 addition & 0 deletions neurometry/_static/scripts/fontawesome.js.map

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2 changes: 1 addition & 1 deletion neurometry/_static/scripts/pydata-sphinx-theme.js

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2 changes: 1 addition & 1 deletion neurometry/_static/scripts/pydata-sphinx-theme.js.map

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38 changes: 25 additions & 13 deletions neurometry/_static/searchtools.js
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@@ -1,12 +1,5 @@
/*
* searchtools.js
* ~~~~~~~~~~~~~~~~
*
* Sphinx JavaScript utilities for the full-text search.
*
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
"use strict";

Expand All @@ -20,7 +13,7 @@ if (typeof Scorer === "undefined") {
// and returns the new score.
/*
score: result => {
const [docname, title, anchor, descr, score, filename] = result
const [docname, title, anchor, descr, score, filename, kind] = result
return score
},
*/
Expand All @@ -47,6 +40,14 @@ if (typeof Scorer === "undefined") {
};
}

// Global search result kind enum, used by themes to style search results.
class SearchResultKind {
static get index() { return "index"; }
static get object() { return "object"; }
static get text() { return "text"; }
static get title() { return "title"; }
}

const _removeChildren = (element) => {
while (element && element.lastChild) element.removeChild(element.lastChild);
};
Expand All @@ -64,9 +65,13 @@ const _displayItem = (item, searchTerms, highlightTerms) => {
const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY;
const contentRoot = document.documentElement.dataset.content_root;

const [docName, title, anchor, descr, score, _filename] = item;
const [docName, title, anchor, descr, score, _filename, kind] = item;

let listItem = document.createElement("li");
// Add a class representing the item's type:
// can be used by a theme's CSS selector for styling
// See SearchResultKind for the class names.
listItem.classList.add(`kind-${kind}`);
let requestUrl;
let linkUrl;
if (docBuilder === "dirhtml") {
Expand Down Expand Up @@ -115,8 +120,10 @@ const _finishSearch = (resultCount) => {
"Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories."
);
else
Search.status.innerText = _(
"Search finished, found ${resultCount} page(s) matching the search query."
Search.status.innerText = Documentation.ngettext(
"Search finished, found one page matching the search query.",
"Search finished, found ${resultCount} pages matching the search query.",
resultCount,
).replace('${resultCount}', resultCount);
};
const _displayNextItem = (
Expand All @@ -138,7 +145,7 @@ const _displayNextItem = (
else _finishSearch(resultCount);
};
// Helper function used by query() to order search results.
// Each input is an array of [docname, title, anchor, descr, score, filename].
// Each input is an array of [docname, title, anchor, descr, score, filename, kind].
// Order the results by score (in opposite order of appearance, since the
// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
const _orderResultsByScoreThenName = (a, b) => {
Expand Down Expand Up @@ -248,6 +255,7 @@ const Search = {
searchSummary.classList.add("search-summary");
searchSummary.innerText = "";
const searchList = document.createElement("ul");
searchList.setAttribute("role", "list");
searchList.classList.add("search");

const out = document.getElementById("search-results");
Expand Down Expand Up @@ -318,7 +326,7 @@ const Search = {
const indexEntries = Search._index.indexentries;

// Collect multiple result groups to be sorted separately and then ordered.
// Each is an array of [docname, title, anchor, descr, score, filename].
// Each is an array of [docname, title, anchor, descr, score, filename, kind].
const normalResults = [];
const nonMainIndexResults = [];

Expand All @@ -337,6 +345,7 @@ const Search = {
null,
score + boost,
filenames[file],
SearchResultKind.title,
]);
}
}
Expand All @@ -354,6 +363,7 @@ const Search = {
null,
score,
filenames[file],
SearchResultKind.index,
];
if (isMain) {
normalResults.push(result);
Expand Down Expand Up @@ -475,6 +485,7 @@ const Search = {
descr,
score,
filenames[match[0]],
SearchResultKind.object,
]);
};
Object.keys(objects).forEach((prefix) =>
Expand Down Expand Up @@ -585,6 +596,7 @@ const Search = {
null,
score,
filenames[file],
SearchResultKind.text,
]);
}
return results;
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6 changes: 0 additions & 6 deletions neurometry/_static/styles/bootstrap.css

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1 change: 0 additions & 1 deletion neurometry/_static/styles/bootstrap.css.map

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32 changes: 31 additions & 1 deletion neurometry/_static/styles/pydata-sphinx-theme.css

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2 changes: 1 addition & 1 deletion neurometry/_static/styles/pydata-sphinx-theme.css.map

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165 changes: 0 additions & 165 deletions neurometry/_static/vendor/fontawesome/6.5.2/LICENSE.txt

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5 changes: 0 additions & 5 deletions neurometry/_static/vendor/fontawesome/6.5.2/css/all.min.css

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2 changes: 0 additions & 2 deletions neurometry/_static/vendor/fontawesome/6.5.2/js/all.min.js

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23 changes: 8 additions & 15 deletions neurometry/_static/webpack-macros.html
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Expand Up @@ -2,30 +2,23 @@
AUTO-GENERATED from webpack.config.js, do **NOT** edit by hand.
These are re-used in layout.html
-->
{# Load FontAwesome icons #}
{% macro head_pre_icons() %}
<link href="{{ pathto('_static/vendor/fontawesome/6.5.2/css/all.min.css', 1) }}?digest=dfe6caa3a7d634c4db9b" rel="stylesheet" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="{{ pathto('_static/vendor/fontawesome/6.5.2/webfonts/fa-solid-900.woff2', 1) }}" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="{{ pathto('_static/vendor/fontawesome/6.5.2/webfonts/fa-brands-400.woff2', 1) }}" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="{{ pathto('_static/vendor/fontawesome/6.5.2/webfonts/fa-regular-400.woff2', 1) }}" />
{% endmacro %}

{% macro head_pre_assets() %}
<!-- Loaded before other Sphinx assets -->
<link href="{{ pathto('_static/styles/theme.css', 1) }}?digest=dfe6caa3a7d634c4db9b" rel="stylesheet" />
<link href="{{ pathto('_static/styles/bootstrap.css', 1) }}?digest=dfe6caa3a7d634c4db9b" rel="stylesheet" />
<link href="{{ pathto('_static/styles/pydata-sphinx-theme.css', 1) }}?digest=dfe6caa3a7d634c4db9b" rel="stylesheet" />
<link href="{{ pathto('_static/styles/theme.css', 1) }}?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
<link href="{{ pathto('_static/styles/pydata-sphinx-theme.css', 1) }}?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
{% endmacro %}

{% macro head_js_preload() %}
<!-- So that users can add custom icons -->
<script src="{{ pathto('_static/scripts/fontawesome.js', 1) }}?digest=26a4bc78f4c0ddb94549"></script>
<!-- Pre-loaded scripts that we'll load fully later -->
<link rel="preload" as="script" href="{{ pathto('_static/scripts/bootstrap.js', 1) }}?digest=dfe6caa3a7d634c4db9b" />
<link rel="preload" as="script" href="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=dfe6caa3a7d634c4db9b" />
<script src="{{ pathto('_static/vendor/fontawesome/6.5.2/js/all.min.js', 1) }}?digest=dfe6caa3a7d634c4db9b"></script>
<link rel="preload" as="script" href="{{ pathto('_static/scripts/bootstrap.js', 1) }}?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=26a4bc78f4c0ddb94549" />
{% endmacro %}

{% macro body_post() %}
<!-- Scripts loaded after <body> so the DOM is not blocked -->
<script src="{{ pathto('_static/scripts/bootstrap.js', 1) }}?digest=dfe6caa3a7d634c4db9b"></script>
<script src="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=dfe6caa3a7d634c4db9b"></script>
<script defer src="{{ pathto('_static/scripts/bootstrap.js', 1) }}?digest=26a4bc78f4c0ddb94549"></script>
<script defer src="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=26a4bc78f4c0ddb94549"></script>
{% endmacro %}
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