copy samtools exe to bin directory

CMakeLists.txt

@@ -60,6 +60,7 @@ set(TEST_DATA_DIRECTORY ${CMAKE_SOURCE_DIR}/test-data)
 configure_file(test-data/TestData.hpp.in test-data/TestData.hpp @ONLY)
 include_directories(${PROJECT_BINARY_DIR}/test-data)
 
+set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIR}/test-bin)
 enable_testing(true)
 add_projects(test/lib)
 

cmake/BuildBoost.cmake

@@ -2,7 +2,6 @@ cmake_minimum_required(VERSION 2.8)
 
 include(ExternalProject)
 
-#set(DEFAULT_BOOST_URL http://sourceforge.net/projects/boost/files/boost/1.54.0/boost_1_54_0.tar.gz)
 set(DEFAULT_BOOST_URL ${CMAKE_SOURCE_DIR}/vendor/boost-1.54-breakdancer.tar.gz)
 if(NOT DEFINED BOOST_URL)
     set(BOOST_URL ${DEFAULT_BOOST_URL})
@@ -22,7 +21,7 @@ foreach(libname ${REQUIRED_BOOST_LIBS})
         )
 endforeach(libname ${REQUIRED_BOOST_LIBS})
 
-message("Downloading boost from ${BOOST_URL}")
+message("Extracting boost from ${BOOST_URL}")
 message("Boost build log can be found at ${BOOST_LOG}")
 
 ExternalProject_Add(

cmake/BuildSamtools.cmake

@@ -3,16 +3,21 @@ cmake_minimum_required(VERSION 2.8)
 include(ExternalProject)
 
 set(SAMTOOLS_ROOT ${CMAKE_BINARY_DIR}/vendor/samtools)
+set(SAMTOOLS_LIB ${SAMTOOLS_ROOT}/${CMAKE_FIND_LIBRARY_PREFIXES}bam${CMAKE_STATIC_LIBRARY_SUFFIX})
+set(SAMTOOLS_BIN ${SAMTOOLS_ROOT}/samtools)
 
 ExternalProject_Add(
-    samtools
+    samtools-0.1.19
     URL ${CMAKE_SOURCE_DIR}/vendor/samtools-0.1.19.tar.gz
     SOURCE_DIR ${SAMTOOLS_ROOT}
     BINARY_DIR ${SAMTOOLS_ROOT}
     CONFIGURE_COMMAND ""
     BUILD_COMMAND make
-    INSTALL_COMMAND ""
+    INSTALL_COMMAND cp ${SAMTOOLS_ROOT}/samtools ${CMAKE_BINARY_DIR}/bin
 )
 
+add_library(bam STATIC IMPORTED)
+set_property(TARGET bam PROPERTY IMPORTED_LOCATION ${SAMTOOLS_LIB})
+
 set(Samtools_INCLUDE_DIRS ${SAMTOOLS_ROOT})
-set(Samtools_LIBRARIES ${SAMTOOLS_ROOT}/${CMAKE_FIND_LIBRARY_PREFIXES}bam${CMAKE_STATIC_LIBRARY_SUFFIX} m z)
+set(Samtools_LIBRARIES bam m z)