Merge pull request #2056 from geneontology/pgaudet-patch-87

Update gorule-0000003.md

metadata/rules/README.md

@@ -10,7 +10,7 @@ For more details for GOC members on how to create rules, see [SOP.md](SOP.md)
 
  * <a href="#gorule0000001">GORULE:0000001 GAF lines are parsed according to GAF 2.2 specifications</a>
  * <a href="#gorule0000002">GORULE:0000002 No 'NOT' annotations to 'protein binding ; GO:0005515'</a>
- * <a href="#gorule0000003">GORULE:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field</a>
+ * <a href="#gorule0000003">GORULE:0000003 Deprecated Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field</a>
  * <a href="#gorule0000004">GORULE:0000004 Reciprocal annotations for 'protein binding ; GO:0005515'</a>
  * <a href="#gorule0000005">GORULE:0000005 No ISS or ISS-related annotations to 'protein binding ; GO:0005515'</a>
  * <a href="#gorule0000006">GORULE:0000006 IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC</a>
@@ -112,10 +112,10 @@ on the GO wiki.
 
 <a name="gorule0000003"/>
 
-## Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field
+## Deprecated Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field
 
  * id: [GORULE:0000003](https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000003.md)
- * status: legacy
+ * status: deprecated
 
 
 Note that this rule has been replaced by GORULE:0000018 and GORULE:0000051.
@@ -133,7 +133,6 @@ specification.
 For more information, see the [binding
 guidelines](http://wiki.geneontology.org/index.php/Binding_Guidelines)
 on the GO wiki.
-Error report (number of errors) in [db_species]-summary.txt & owltools-check.txt (details).
 
 <a name="gorule0000004"/>
 

metadata/rules/gorule-0000003.md

@@ -1,10 +1,10 @@
 ---
 layout: rule
 id: GORULE:0000003
-title: "Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field"
+title: "Deprecated Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field"
 type: report
 fail_mode: soft
-status: legacy
+status: deprecated
 contact: "[email protected]"
 implementations:
   - language: java 
@@ -25,4 +25,3 @@ specification.
 For more information, see the [binding
 guidelines](http://wiki.geneontology.org/index.php/Binding_Guidelines)
 on the GO wiki.
-Error report (number of errors) in [db_species]-summary.txt & owltools-check.txt (details).