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Garud Lab

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  1. Signature-SNVs Signature-SNVs Public

    Signature-SNVs a method for selecting signature SNVs from metagenomic data for input into FEAST for source tracking.

    R 4

  2. CompPopGenMicrobiomeReview CompPopGenMicrobiomeReview Public

    Python 1 1

  3. Harris_etal_response Harris_etal_response Public

    Python 1 1

  4. Microbiome_PCA_Correction Microbiome_PCA_Correction Public

    Jupyter Notebook 1

  5. mother_infant mother_infant Public

    Extension of Good and Garud et al. microbiome evolution codebase. Investigating eco-evo dynamics in the mother and infant gut microbiome.

    Jupyter Notebook 1

  6. SelectiveSweeps_Xchr_vs_Auto SelectiveSweeps_Xchr_vs_Auto Public

    Code for contrasting selective sweeps in Autosomes and X chromosome of D. melanogaster

    Python

Repositories

Showing 9 of 9 repositories
  • microbiome_demography_manuscript Public

    GitHub repository for Mah, Lohmueller, and Garud 2023, bioRxiv

    garudlab/microbiome_demography_manuscript’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 1, 2024
  • Signature-SNVs Public

    Signature-SNVs a method for selecting signature SNVs from metagenomic data for input into FEAST for source tracking.

    garudlab/Signature-SNVs’s past year of commit activity
    R 4 GPL-3.0 0 0 0 Updated Apr 2, 2024
  • DrosCrossSpecies_XchrHardSweeps Public

    Code for manuscript: "Enrichment of hard sweeps on the X chromosome compared to autosomes in six Drosophila species"

    garudlab/DrosCrossSpecies_XchrHardSweeps’s past year of commit activity
    Python 0 0 0 0 Updated Jan 10, 2024
  • mother_infant Public

    Extension of Good and Garud et al. microbiome evolution codebase. Investigating eco-evo dynamics in the mother and infant gut microbiome.

    garudlab/mother_infant’s past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause 1 0 0 Updated Mar 6, 2023
  • SelectiveSweeps_Xchr_vs_Auto Public

    Code for contrasting selective sweeps in Autosomes and X chromosome of D. melanogaster

    garudlab/SelectiveSweeps_Xchr_vs_Auto’s past year of commit activity
    Python 0 0 1 0 Updated Jan 19, 2023
  • StrainStability Public
    garudlab/StrainStability’s past year of commit activity
    Python 0 0 0 0 Updated Jan 2, 2023
  • Microbiome_PCA_Correction Public
    garudlab/Microbiome_PCA_Correction’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 3, 2022
  • CompPopGenMicrobiomeReview Public
    garudlab/CompPopGenMicrobiomeReview’s past year of commit activity
    Python 1 BSD-2-Clause 1 0 0 Updated May 25, 2021
  • Harris_etal_response Public
    garudlab/Harris_etal_response’s past year of commit activity
    Python 1 1 0 0 Updated Mar 18, 2021

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