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updated deseq2 paramter selection #5429

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Oct 9, 2024
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updated deseq2 paramter selection #5429

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2 changes: 2 additions & 0 deletions topics/transcriptomics/tutorials/ref-based/tutorial.md
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Expand Up @@ -1489,6 +1489,8 @@ We can now run **DESeq2**:
> - In *"Count file(s)"*: `Select all the single-end count files (GSM461176, GSM461179, GSM461182)`
> - *"Files have header?"*: `Yes`
> - *"Choice of Input data"*: `Count data (e.g. from HTSeq-count, featureCounts or StringTie)`
> - In *"Advanced options"*:
> - *"Use beta priors"*: `Yes`
> - In *"Output options"*:
> - *"Output selector"*: `Generate plots for visualizing the analysis results`, `Output normalised counts`
>
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