Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update tutorial.md #4744

Merged
merged 1 commit into from
Feb 20, 2024
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion topics/data-science/tutorials/gnmx-lecture6/tutorial.md
Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,7 @@

Coronavirus is a spherical particle approx. 125 nm in diameter. It is covered with S-protein projections giving it an appearance of solar corona - hence the term coronavirus. Inside the envelope is a nucleocapsid that has helical symmetry far more typical of (-)-strand RNA viruses. There are four main structure proteins: spike (S), membrane (M), envelope (E), and nucleocapsid (N; Fig. below [Masters:2006](http://dx.doi.org/10.1016/S0065-3527(06)66005-3)):

![Virion structure](https://ars.els-cdn.com/content/image/1-s2.0-S0065352706660053-gr1.jpg "Schematic of the coronavirus virion, with the minimal set of structural proteins"
![Virion structure](https://ars.els-cdn.com/content/image/1-s2.0-S0065352706660053-gr1.jpg "Schematic of the coronavirus virion, with the minimal set of structural proteins")

Mature S protein is a trimer of two subunits: S1 and S2. The two subunits are produced from a single S-precursor by host proteases (see [Kirchdoerfer:2016](http://dx.doi.org/10.1038/nature17200); this however is not the case for all coronaviruses such as SARS-CoV). S1 forms the receptor-binding domain, while S2 forms the stalk.

Expand Down Expand Up @@ -548,7 +548,7 @@

![Dataframe melt](https://pandas.pydata.org/docs/_images/07_melt.svg)

> Image from [Pandas Docs](https://pandas.pydata.org/docs/getting_started/intro_tutorials/07_reshape_table_layout.html#wide-to-long-format).

Check failure on line 551 in topics/data-science/tutorials/gnmx-lecture6/tutorial.md

View workflow job for this annotation

GitHub Actions / lint

[] reported by reviewdog 🐶 Potential broken box. A None was opened on 550, but not closed on line 551 Raw Output: topics/data-science/tutorials/gnmx-lecture6/tutorial.md:551: Potential broken box. A None was opened on 550, but not closed on line 551


```python
Expand Down Expand Up @@ -584,7 +584,7 @@

![Dataframe pivot](https://pandas.pydata.org/docs/_images/07_pivot.svg)

> Image from [Pandas Docs](https://pandas.pydata.org/docs/getting_started/intro_tutorials/07_reshape_table_layout.html#long-to-wide-table-format).

Check failure on line 587 in topics/data-science/tutorials/gnmx-lecture6/tutorial.md

View workflow job for this annotation

GitHub Actions / lint

[] reported by reviewdog 🐶 Potential broken box. A None was opened on 586, but not closed on line 587 Raw Output: topics/data-science/tutorials/gnmx-lecture6/tutorial.md:587: Potential broken box. A None was opened on 586, but not closed on line 587


```python
Expand Down Expand Up @@ -626,7 +626,7 @@

![Inner join](https://upload.wikimedia.org/wikipedia/commons/thumb/1/18/SQL_Join_-_07_A_Inner_Join_B.svg/234px-SQL_Join_-_07_A_Inner_Join_B.svg.png?20170204165143)

> Figure from Wikimedia Commons

Check failure on line 629 in topics/data-science/tutorials/gnmx-lecture6/tutorial.md

View workflow job for this annotation

GitHub Actions / lint

[] reported by reviewdog 🐶 Potential broken box. A None was opened on 628, but not closed on line 629 Raw Output: topics/data-science/tutorials/gnmx-lecture6/tutorial.md:629: Potential broken box. A None was opened on 628, but not closed on line 629

Using pandas `merge`:

Expand All @@ -646,7 +646,7 @@

![Left join again](https://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/SQL_Join_-_01b_A_Left_Join_B.svg/234px-SQL_Join_-_01b_A_Left_Join_B.svg.png?20170204144906)

> Figure from Wikimedia Commons

Check failure on line 649 in topics/data-science/tutorials/gnmx-lecture6/tutorial.md

View workflow job for this annotation

GitHub Actions / lint

[] reported by reviewdog 🐶 Potential broken box. A None was opened on 648, but not closed on line 649 Raw Output: topics/data-science/tutorials/gnmx-lecture6/tutorial.md:649: Potential broken box. A None was opened on 648, but not closed on line 649

Using pandas `merge`:

Expand All @@ -669,7 +669,7 @@

![Right join](https://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/SQL_Join_-_03_A_Right_Join_B.svg/234px-SQL_Join_-_03_A_Right_Join_B.svg.png?20170130230641)

> Figure from Wikimedia Commons

Check failure on line 672 in topics/data-science/tutorials/gnmx-lecture6/tutorial.md

View workflow job for this annotation

GitHub Actions / lint

[] reported by reviewdog 🐶 Potential broken box. A None was opened on 671, but not closed on line 672 Raw Output: topics/data-science/tutorials/gnmx-lecture6/tutorial.md:672: Potential broken box. A None was opened on 671, but not closed on line 672

Using pandas `merge`:

Expand All @@ -682,7 +682,7 @@

![Full join](https://upload.wikimedia.org/wikipedia/commons/thumb/6/61/SQL_Join_-_05_A_Full_Join_B.svg/234px-SQL_Join_-_05_A_Full_Join_B.svg.png?20170130230643)

> Figure from Wikimedia Commons

Check failure on line 685 in topics/data-science/tutorials/gnmx-lecture6/tutorial.md

View workflow job for this annotation

GitHub Actions / lint

[] reported by reviewdog 🐶 Potential broken box. A None was opened on 684, but not closed on line 685 Raw Output: topics/data-science/tutorials/gnmx-lecture6/tutorial.md:685: Potential broken box. A None was opened on 684, but not closed on line 685

Using pandas `merge`:

Expand Down
Loading