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Automated dev terminal recordings #4702
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reported by reviewdog 🐶
A code_in was opened, but closed with code_out on line 432
@@ -435,6 +436,19 @@ Note that for using `planemo`from a new shell you will need to activate the pyth | |||
> 3. `planemo SUBCOMMAND --help` will show the usage information for the corresponding subcommand. Try to obtain the information for the `lint` subcommand. |
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reported by reviewdog 🐶
A code_in was opened, but closed with hands_on on line 436
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🚫 [rdjsonl] <GTN:028> reported by reviewdog 🐶
You have skipped a heading level, please correct this.
Listing of Heading Levels
# Galaxy Tools and Conda
## Writing a Bioconda Recipe
## Building the recipe locally
## Creating a Pull Request
## Installing a Conda Package
# Galaxy Tool Wrappers
## Installing Planemo
## Pre-recorded demo
## Initializing a Tool Wrapper
## Galaxy Tool Wrappers
### Tool section
### Description section
### Macros section
### Bio.tools ID
### Requirements section
### Input section
#### *Param*
#### *Conditional*
#### *Section*
#### *Inputs Section in Practice*
### Outputs section
#### *Filtering the output*
#### *Output collections*
#### *Discover datasets*
### Command section
#### *Cheetah commands*
# if ${parameter} == "value":
# end if
# if ${parameter} == "value":
# else:
# end if
# if ${parameter} == "value":
# else if ${parameter} == "other value":
# else:
# end if
# for value in ${param}
# end for
# set $variable = value
#### *Using other scripts*
#### *In practice*
#### Symlinks
### Test section
#### *Collections and sections in tests*
### Help section
### Citations section
## Final wrapper
## Toolshed file
# Testing Galaxy tool with `planemo`
## Using `planemo` to lint tools
## Using `planemo` to test tools
## Using `planemo` to serve tools
# Publishing Galaxy tools
## Fork and clone the github repository
## Create a pull request for a new tool
## The IUC style continuous integration workflows
## Create your own IUC style tool repository
# Conclusion
reviewdog suggestion error
source lines are not available
it's a nice feature, but, no time. |
not sure if we should ship this as is
it's a nice improvement, since it gives the user somehing slightly more interactive to play with. but it also should be made more general. And perhaps it's a slight downgrade from xml syntax highlighting? Alternatively also should run the planemo command itself (using more of the auto-gat machinery, rather than just 'typing' the first file.)
it's an improvement over the existing auto-gat pipeline since it's just a cast file, we can have the CI regenerate these on-demand, and update the
tutorial.cast
file next to the tutorial and it all works nicely.