use Zenodo links and add answer history

galaxyproject · Dec 12, 2024 · fc568ae · fc568ae
1 parent 0382ac8
commit fc568ae
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diff --git a/topics/single-cell/tutorials/scrna-scater-qc/data-library.yaml b/topics/single-cell/tutorials/scrna-scater-qc/data-library.yaml
@@ -15,15 +15,15 @@ items:
     - name: 'DOI: 10.5281/zenodo.3386291'
       description: latest
       items:
-      - url: https://zenodo.org/api/files/83bb489c-cd94-4d33-b8f4-da1dd7ee8e2b/annotation.txt
+      - url: https://zenodo.org/records/3386291/files/annotation.txt
         src: url
         ext: txt
         info: https://doi.org/10.5281/zenodo.3386291
-      - url: https://zenodo.org/api/files/83bb489c-cd94-4d33-b8f4-da1dd7ee8e2b/counts.txt
+      - url: https://zenodo.org/records/3386291/files/counts.txt
         src: url
         ext: txt
         info: https://doi.org/10.5281/zenodo.3386291
-      - url: https://zenodo.org/api/files/83bb489c-cd94-4d33-b8f4-da1dd7ee8e2b/mt_controls.txt
+      - url: https://zenodo.org/records/3386291/files/mt_controls.txt
         src: url
         ext: txt
         info: https://doi.org/10.5281/zenodo.3386291
diff --git a/topics/single-cell/tutorials/scrna-scater-qc/tutorial.md b/topics/single-cell/tutorials/scrna-scater-qc/tutorial.md
@@ -7,6 +7,10 @@ priority: 1
 redirect_from:
   - /topics/transcriptomics/tutorials/scrna-scater-qc/tutorial
 zenodo_link: 'https://zenodo.org/record/3386291'
+answer_histories:
+  - label: "UseGalaxy.eu"
+    history: https://singlecell.usegalaxy.eu/u/videmp/h/single-cell-qc-with-scater
+    date: 2024-12-12
 tags:
 questions:
 - How to ensure the quality of single-cell RNA-seq data?
@@ -35,6 +39,8 @@ key_points:
 contributors:
 - ethering
 - nsoranzo
+testing:
+- pavanvidem
 
 gitter: Galaxy-Training-Network/galaxy-single-cell
 

diff --git a/topics/single-cell/tutorials/scrna-scater-qc/workflows/Single-cell-QC-with-scater-tests.yml b/topics/single-cell/tutorials/scrna-scater-qc/workflows/Single-cell-QC-with-scater-tests.yml
@@ -2,15 +2,15 @@
   job:
     annotation.txt:
       class: File
-      path: test-data/annotation.txt.tabular
+      location: https://zenodo.org/records/3386291/files/annotation.txt
       filetype: tabular
     counts.txt:
       class: File
-      path: test-data/counts.txt.tabular
+      location: https://zenodo.org/records/3386291/files/counts.txt
       filetype: tabular
     mt_controls.txt:
       class: File
-      path: test-data/mt_controls.txt.txt
+      location: https://zenodo.org/records/3386291/files/mt_controls.txt
       filetype: txt
   outputs:
     lib_qc_plot:

diff --git a/topics/single-cell/tutorials/scrna-scater-qc/workflows/test-data/annotation.tabular b/topics/single-cell/tutorials/scrna-scater-qc/workflows/test-data/annotation.tabular