deploy: b2657cd

404.html

@@ -18,7 +18,7 @@
 	console.log("Sentry: opt-in");
 	Sentry.init({
 		dsn: "https://[email protected]/10",
-		release: "galaxy-training-network@54bff7d0bbf3b8db0b3bd0a440a2db8ebf717963",
+		release: "galaxy-training-network@b2657cd0007ef7ad923f752b42c0aff6d0c05db0",
 		integrations: [new Sentry.BrowserTracing(), new Sentry.Replay()],
 		sampleRate: 0.1,
 		tracesSampleRate: 0.1,
@@ -269,7 +269,7 @@ <h2 id="oops-we-cant-seem-to-find-the-page-youre-looking-for">Oops! We can’t s
 				</ul>
 				<span style="font-size: 1.3em">Framework</span>
 				<ul class="no-bullets">
-					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/54bff7d0bbf3b8db0b3bd0a440a2db8ebf717963">54bff7d</a></li>
+					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/b2657cd0007ef7ad923f752b42c0aff6d0c05db0">b2657cd</a></li>
 					<li><a rel="license" href="https://github.com/galaxyproject/training-material/blob/main/LICENSE.md">MIT</a> Licensed</li>
 					<li><a href="https://jekyllrb.com/">Jekyll(4.3.2 | production)</a></li>
 				</ul>

accessibility.html

@@ -18,7 +18,7 @@
 	console.log("Sentry: opt-in");
 	Sentry.init({
 		dsn: "https://[email protected]/10",
-		release: "galaxy-training-network@54bff7d0bbf3b8db0b3bd0a440a2db8ebf717963",
+		release: "galaxy-training-network@b2657cd0007ef7ad923f752b42c0aff6d0c05db0",
 		integrations: [new Sentry.BrowserTracing(), new Sentry.Replay()],
 		sampleRate: 0.1,
 		tracesSampleRate: 0.1,
@@ -320,7 +320,7 @@ <h3 id="additional-features">Additional Features</h3>
 				</ul>
 				<span style="font-size: 1.3em">Framework</span>
 				<ul class="no-bullets">
-					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/54bff7d0bbf3b8db0b3bd0a440a2db8ebf717963">54bff7d</a></li>
+					<li>Revision <a href="https://github.com/galaxyproject/training-material/commit/b2657cd0007ef7ad923f752b42c0aff6d0c05db0">b2657cd</a></li>
 					<li><a rel="license" href="https://github.com/galaxyproject/training-material/blob/main/LICENSE.md">MIT</a> Licensed</li>
 					<li><a href="https://jekyllrb.com/">Jekyll(4.3.2 | production)</a></li>
 				</ul>

api/configuration.json

@@ -135,7 +135,7 @@
       "resources": [
         "assets/js/theme.js"
       ],
-      "timestamp": 1730851585,
+      "timestamp": 1730912503,
       "hash": "f1f2de89",
       "path": "/assets/js/bundle.theme.f1f2de89.js"
     },
@@ -152,7 +152,7 @@
         "assets/js/anchor.min.js",
         "assets/js/main.js"
       ],
-      "timestamp": 1730851585,
+      "timestamp": 1730912503,
       "hash": "40d4e218",
       "path": "/assets/js/bundle.main.40d4e218.js"
     }
@@ -347,8 +347,8 @@
   "serving": false,
   "boxify": {
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-  "git_revision": "54bff7d0bbf3b8db0b3bd0a440a2db8ebf717963",
-  "git_revision_short": "54bff7d",
+  "git_revision": "b2657cd0007ef7ad923f752b42c0aff6d0c05db0",
+  "git_revision_short": "b2657cd",
   "gtn_fork": "galaxyproject",
   "git_tags": [
 

api/feedback.csv

@@ -3220,3 +3220,5 @@
 3218,5,,,,Identification of somatic and germline variants from tumor and normal sample pairs,Variant Analysis,2024-11,2024-11-02
 3219,4,,,,Identification of somatic and germline variants from tumor and normal sample pairs,Variant Analysis,2024-11,2024-11-02
 3220,2,"clear and step by setp, but had to stop at Exploring the CVMFS Installation because it wasn't loading the cvmfs filesystem for data.galaxyproject.org. ",here is the output from autofs  (cvmfs-config.cern.ch) (manager 'default') switching proxy from (none) to DIRECT. Reason: set random start proxy from the first proxy group Nov 04 15:01:29 csci-galactose cvmfs2[1305995]: (cvmfs-config.cern.ch) (manager 'default') geographic order of servers retrieved from cvmfs-stratum-one.cern.ch Nov 04 15:01:29 csci-galactose cvmfs2[1305995]: (cvmfs-config.cern.ch) (manager 'default') switching proxy from (none) to DIRECT. Reason: cloned Nov 04 15:01:30 csci-galactose cvmfs2[1305995]: (cvmfs-config.cern.ch) CernVM-FS: linking /cvmfs/cvmfs-config.cern.ch to repository cvmfs-config.cern.ch Nov 04 15:01:30 csci-galactose cvmfs2[1306050]: (data.galaxyproject.org) no public key loaded Nov 04 15:01:30 csci-galactose cvmfs2[1306050]: (data.galaxyproject.org) (manager 'default') switching proxy from (none) to DIRECT. Reason: set random start proxy from the first proxy group Nov 04 15:01:30 csci-galactose cvmfs2[1306050]: (data.galaxyproject.org) (manager 'default') switching proxy from (none) to DIRECT. Reason: cloned Nov 04 15:01:30 csci-galactose cvmfs2[1306050]: (data.galaxyproject.org) failed to download repository manifest (2 - malformed URL) Nov 04 15:01:30 csci-galactose cvmfs2[1306050]: (data.galaxyproject.org) Failed to initialize root file catalog (16 - file catalog failure) ,,Reference Data with CVMFS,Galaxy Server administration,2024-11,2024-11-04
+3221,4,,,,A short introduction to Galaxy,Introduction to Galaxy Analyses,2024-11,2024-11-06
+3222,5,Easily explained and to follow,Provide the full reference for tx2g file or a link with it. Complete the visualization section please :),,Differential abundance testing of small RNAs,Transcriptomics,2024-11,2024-11-06

api/feedback.json

@@ -35429,5 +35429,27 @@
     "topic": "Galaxy Server administration",
     "month": "2024-11",
     "date": "2024-11-04"
+  },
+  {
+    "": "3221",
+    "note": "4",
+    "pro": null,
+    "con": null,
+    "anonymous": null,
+    "tutorial": "A short introduction to Galaxy",
+    "topic": "Introduction to Galaxy Analyses",
+    "month": "2024-11",
+    "date": "2024-11-06"
+  },
+  {
+    "": "3222",
+    "note": "5",
+    "pro": "Easily explained and to follow",
+    "con": "Provide the full reference for tx2g file or a link with it. Complete the visualization section please :)",
+    "anonymous": null,
+    "tutorial": "Differential abundance testing of small RNAs",
+    "topic": "Transcriptomics",
+    "month": "2024-11",
+    "date": "2024-11-06"
   }
 ]

api/feedback2.yaml

@@ -5899,6 +5899,11 @@ introduction:
     con: 
     date: '2024-11-02'
     lang: 
+  - rating: 4
+    pro: 
+    con: 
+    date: '2024-11-06'
+    lang: 
   igv-introduction:
   - rating: 5
     pro: 
@@ -11747,6 +11752,12 @@ transcriptomics:
       make it easier to do some of the repetitive parts of the tutorial '
     date: '2021-03-12'
     lang: 
+  - rating: 5
+    pro: Easily explained and to follow
+    con: Provide the full reference for tx2g file or a link with it. Complete the
+      visualization section please :)
+    date: '2024-11-06'
+    lang: 
   rna-seq-viz-with-heatmap2:
   - rating: 5
     pro: 

api/psl/galaxy-ntnu.bioinfo.no/toolshed_nels/repos/hien/gest.json

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+{"report2gest4/4.0.0":[{"url":"https://usegalaxy.no/","name":"UseGalaxy.no","usegalaxy":false}],"gest4_extract/4.0.0":[{"url":"https://usegalaxy.no/","name":"UseGalaxy.no","usegalaxy":false}],"gest4/4.0.0":[{"url":"https://usegalaxy.no/","name":"UseGalaxy.no","usegalaxy":false}]}

api/psl/galaxy-ntnu.bioinfo.no/toolshed_nels/repos/kjetil/edge_pro.json

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api/psl/galaxy-ntnu.bioinfo.no/toolshed_nels/repos/kjetil/fastq_sync.json

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api/psl/testtoolshed.g2.bx.psu.edu/repos/estrain/skesamlst/skesaMLST.json

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api/psl/toolrepo.galaxytrakr.org/repos/jpayne/bioproject_to_srr_2/bio2srr.json

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api/psl/toolshed.g2.bx.psu.edu/repos/artbio/blastparser_and_hits/BlastParser_and_hits.json

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api/psl/toolshed.g2.bx.psu.edu/repos/bebatut/format_cd_hit_output/format_cd_hit_output.json

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api/psl/toolshed.g2.bx.psu.edu/repos/bgruening/agat/agat.json

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api/psl/toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin.json

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