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Genomic interval tool search part corrected - Update tutorial.md
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Addressing #4174

in biref: The 'Intersect' keyword motivated to type to the search box did not give literal tool result in section "Operate on Genomic Intervals toolbox, Join and particularly Intersect" anymore.
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sebastian-schaaf authored Feb 14, 2024
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Expand Up @@ -411,11 +411,11 @@ Galaxy excels at answering questions about genomic intervals and different sets
> * *Explore* the tools in this toolbox, looking for something that we can use to see which genes on opposite strands overlap.
{: .hands_on}

Of the tools in the **Operate on Genomic Intervals** toolbox, **Join** and particularly **Intersect** have the most promise. Let's try **Intersect**.
Although there are the bedtools (section **BED**) and a section **Operate on Genomic Intervals** offering promising tools, the simple **Intersect** tool under **Text Manipulation** appears sufficient. Let's try **Intersect**.

> <hands-on-title>Genomic Interval Tools</hands-on-title>
>
> 1. {% tool [Intersect](toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/0.0.1) %} with the following parameters:
> 1. {% tool [Intersect](toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0) %} with the following parameters:
> - *"Return"*: `Overlapping Intervals`.
> This looks like it might return whole genes, while `Overlapping pieces` may return only the parts that overlap. We suspect that whole genes might be more useful.
> - {% icon param-files %}*"of"*: `Genes, forward strand` (the first dataset)
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