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Merge pull request #4554 from bernt-matthias/topic/mothur-fix-n
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fix number of samples for mothur tutorial
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shiltemann authored Nov 27, 2023
2 parents f735737 + 3879070 commit 98e1a6a
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6 changes: 3 additions & 3 deletions topics/metagenomics/tutorials/mothur-miseq-sop/content.md
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Expand Up @@ -81,13 +81,13 @@ weight observed during the first 10 dpw affected the stability microbiome compar

![Experiment setup](../../images/experiment_setup.png)

To speed up analysis for this tutorial, we will use only a subset of this data. We will look at a single mouse at 10 different
time points (5 early, 5 late). In order to assess the error rate of the analysis pipeline and experimental setup, the Schloss lab
To speed up analysis for this tutorial, we will use only a subset of this data. We will look at a single mouse at 20 different
time points (10 early, 10 late). In order to assess the error rate of the analysis pipeline and experimental setup, the Schloss lab
additionally sequenced a mock community with a known composition (genomic DNA from 21 bacterial strains). The sequences used
for this mock sample are contained in the file `HMP_MOCK.v35.fasta`

> <comment-title>Dataset naming scheme</comment-title>
> For this tutorial, you are given 10 pairs of files. For example, the following pair of files:<br />
> For this tutorial, you are given 20 pairs of files. For example, the following pair of files:<br />
> `F3D0_S188_L001_R1_001.fastq`<br />
> `F3D0_S188_L001_R2_001.fastq`
>
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