Merge pull request #4759 from Camila-goclowski/FPE_SeuratTools

New Filter, Plot, and Explore Tutorial Using Seurat Tools!

topics/single-cell/tutorials/scrna-case_FilterPlotandExplore_SeuratTools/tutorial.bib

@@ -0,0 +1,78 @@
+# This is the bibliography file for your tutorial.
+#
+# To add bibliography (bibtex) entries here, follow these steps:
+#  1) Find the DOI for the article you want to cite
+#  2) Go to https://doi2bib.org and fill in the DOI
+#  3) Copy the resulting bibtex entry into this file
+#
+# To cite the example below, in your tutorial.md file
+# use {% cite Batut2018 %}
+#
+# If you want to cite an online resourse (website etc)
+# you can use the 'online' format (see below)
+#
+# You can remove the examples below
+
+@article{Bacon2018,
+  doi = {10.3389/fimmu.2018.02523},
+  url = {https://doi.org/10.3389/fimmu.2018.02523},
+  year = {2018},
+  month = nov,
+  publisher = {Frontiers Media {SA}},
+  volume = {9},
+  author = {Wendi A. Bacon and Russell S. Hamilton and Ziyi Yu and Jens Kieckbusch and Delia Hawkes and Ada M. Krzak and Chris Abell and Francesco Colucci and D. Stephen Charnock-Jones},
+  title = {Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice},
+  journal = {Frontiers in Immunology}
+}
+
+@article{Wolf2018,
+  doi = {10.1186/s13059-017-1382-0},
+  url = {https://doi.org/10.1186/s13059-017-1382-0},
+  year = {2018},
+  month = feb,
+  publisher = {Springer Science and Business Media {LLC}},
+  volume = {19},
+  number = {1},
+  author = {F. Alexander Wolf and Philipp Angerer and Fabian J. Theis},
+  title = {{SCANPY}: large-scale single-cell gene expression data analysis},
+  journal = {Genome Biology}
+}
+
+@article{Satija2015,
+  doi = {10.1038/nbt.3192},
+  url = {https://doi.org/10.1038/nbt.3192},
+  year = {2015},
+  month = May,
+  publisher = {Nature Anerica Inc. All rights reserved},
+  volume = {33},
+  number = {5},
+  author = {Rahul Satija and Jeffrey A. Farrell and David Gennert and Alexander F Schier and Aviv Regev},
+  title = {Spatial reconstruction of single-cell gene expression data},
+  journal = {Nature Biotechnology}
+}
+
+@article{Trapnell2014,
+  doi = {10.1038/nbt.2859},
+  url = {https://doi.org/10.1038/nbt.2859},
+  year = {2014},
+  month = April,
+  publisher = {Nature Anerica Inc. All rights reserved},
+  volume = {32},
+  number = {4},
+  author = {Cole Trapnell and Davide Cacchiarelli and Jonna Grimsby and Prapti Pokharel and Shuqiang Li and Michael Morse and Niall J Lennon and Kenneth J Livak and Tarjei S Mikkelsen and John L Rinn},
+  title = {Pseudo-temporal ordering of individual cells reveals dynamics and regulators of cell fate decisions},
+  journal = {Nature Biotechnology}
+}
+
+@article{McCarthy2017,
+  doi = {10.1093/bioinformatics/btw777},
+  url = {https://doi.org/10.1093/bioinformatics/btw777},
+  year = {2017},
+  month = January,
+  publisher = {Advanced Access Publication},
+  volume = {33},
+  number = {8},
+  author = {Davis J McCarthy and Kieran R Campbell and Aaron T L Lun and Quin F Wills},
+  title = {Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R},
+  journal = {Bioinformatics}
+}