improve layout of custom sessions and mixed custom/gtn sections

events/2024-06-10-mtb-ngs.html

@@ -126,6 +126,8 @@
 
 
   - section: "Day 2: Mapping and variant calling"
+    custom: true
+    async: true
     description: |
       The 20 strains isolated in your country have been sequenced with
       Illumina technology to obtain whole-genome sequences. In this part
@@ -175,8 +177,11 @@
         name: galaxy-intro-short
       - topic: introduction
         name: galaxy-intro-101
+
   - section: "Session 2: Mapping and Variant calling of short MTBC reads "
     subsection: true
+    custom: true
+    async: true
     description: |
       Let us imagine that you have received the sequences of the 20 strains, the first step is to assess the quality of sequencing. Once we are sure that the sequencing worked well, we typically compare our sequencing results to a reference genome (re-sequencing approach) by using a bioinformatics procedure usually called mapping. After, we will identify the genomic variants in our sequences with respect to the reference genome, a bioinformatics procedure called, variant calling. Once we are certain of the variants we have identified, usually we are interested in determining to what genes they belong, to what pathways, or for instance if they are likely to disrupt protein function. This procedure is called annotation. Once we have gone through each of these steps we are ready to analyse drug resistant patterns, draw phylogenetic relationships or identify clusters of transmission of M. tuberculosis.
 
@@ -196,19 +201,34 @@
 
 
           *The completion of the assessments is a requirement for the certificate of attendance.*
+
+  - section:
+    custom: true
+    tutorials:
       - type: custom
         name: "**Meet the experts: Q&A session**"
         time: "11:30-12:30 Central European Time"
         description: |
           Meet the experts! Join us on [Zoom](https://swisstph.zoom.us/j/88614333103?pwd=OVVjeG04a2lVMXB0THUxMXoxNUNkdz09).
+
+  - section:
+    tutorials:
       - name: tb-variant-analysis
         topic: variant-analysis
+  - section:
+    custom: true
+    tutorials:
       - type: custom
         name: "**Meet the experts: Q&A session**"
-        time: "16:30-17:30 CET"
+        time: |
+          16:30-17:30
+          Central European Time
         description: |
           Join us on [Zoom](https://swisstph.zoom.us/j/88614333103?pwd=OVVjeG04a2lVMXB0THUxMXoxNUNkdz09).
 
+
+
+
   - section: "Day 3: Evolutionary epidemiology: using phylogenetics to understand DR emergence and Mtb transmission"
     description: |
       We are ready to analyse drug resistant patterns, draw phylogenetic relationships or
@@ -218,6 +238,8 @@
       resistant patterns.
   - section: "Evolutionary epidemiology: using phylogenetics to understand DR emergence and Mtb transmission"
     subsection: true
+    async: true
+    custom: true
     tutorials:
       - name: Icebreaker
         type: custom
@@ -272,9 +294,15 @@
 
           *The completion of the assessment is a requirement for the certificate of attendance.*
 
+  - section:
+    async: true
+    tutorials:
       - name: mtb_transmission
         topic: evolution
 
+  - section:
+    custom: true
+    tutorials:
       - type: custom
         name: "**Meet the experts: Q&A session**"
         time: "11:30-12:30 Central European timeT"
@@ -287,9 +315,16 @@
            Have a look at [this EMBL-EBI course](https://www.ebi.ac.uk/training/online/courses/introduction-to-phylogenetics/).
            Recommended to those wanting to learn more about phylogenetics.
 
+  - section:
+    async: true
+    tutorials:
       - name:  mtb_phylogeny
         topic: evolution
 
+  - section:
+    custom: true
+    async: true
+    tutorials:
       - type: custom
         name: "Check what you have learnt!"
         description: |
@@ -299,15 +334,22 @@
 
           *The completion of the assessment is a requirement for the certificate of attendance.*
 
+  - section:
+    custom: true
+    tutorials:
       - type: custom
         name: "**Meet the experts: Q&A session**"
         time: "16:30-17:30 Central European Time"
         description: |
           Discussion with the experts! Join us on [Zoom](https://swisstph.zoom.us/j/88614333103?pwd=OVVjeG04a2lVMXB0THUxMXoxNUNkdz09).
 
+
+
   - section: "Day 4: Webtools dedicated to MTBC bioinformatics & Be a bioinformatician in the jungle (optional)"
   - section: "Session 1: Webtools dedicated to MTBC bioinformatics"
     subsection: true
+    custom: true
+    async: true
     description: |
       The use of whole-genome sequencing (WGS) for antibiotic resistance prediction and routine
       typing of bacterial isolates has increased substantially in recent years. To date a
@@ -345,7 +387,9 @@
 
           [Watch Webinar](https://youtu.be/ob29WYXwLxo) (30 minutes)
 
-
+  - section:
+    custom: true
+    tutorials:
       - type: custom
         name: "**Meet the experts: Q&A session**"
         time: "11:30-12:30 Central European Time"
@@ -355,6 +399,8 @@
 
   - section:  "Session 2: Be a bioinformatician in the jungle (optional)"
     subsection: true
+    custom: true
+    async: true
     description: |
       On Day 2 and 3 you have learned how you could use galaxy for analysing your own data.
       Establishing your own workflows in galaxy would allow you combining different tools and
@@ -404,6 +450,9 @@
 
           [View Carpentries Tutorial](https://swcarpentry.github.io/shell-novice/) (4 hours)
 
+  - section:
+    custom: true
+    tutorials:
       - type: custom
         name: "**Meet the experts: Q&A session**"
         time: "16:30-17:30 Central European time"