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touch slides to force regeneration of slides-to-video
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shiltemann committed Aug 8, 2024
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1 change: 1 addition & 0 deletions topics/admin/tutorials/ansible/slides.html
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- Ansible has a repository for public roles.
- There are a huge number of available roles for common tasks.
- It is called Ansible Galaxy, but it is a different Galaxy.

1 change: 1 addition & 0 deletions topics/admin/tutorials/cvmfs/slides.html
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- There are CVMFS servers across the entire world
- The primary mirrors are run by Galaxy project, Galaxy Europe, and Galaxy Australia
- If one of these mirrors fails, you will still be able to use the reference data

1 change: 1 addition & 0 deletions topics/admin/tutorials/gxadmin/slides.html
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- For monitoring, many galaxy sites use Influx DB.
- gxadmin supports exporting influx compatible format.
- This makes it easy to add new data and graphs to your monitoring.

1 change: 0 additions & 1 deletion topics/admin/tutorials/monitoring/slides.html
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- This can give a good view of which repositories are replicated.



1 change: 1 addition & 0 deletions topics/admin/tutorials/users-groups-quotas/slides.html
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- An important aspect for security is that if you have local users on the Galaxy head node
- Then you should set the `remote_user_secret` option, to prevent them impersonating other users

1 change: 1 addition & 0 deletions topics/climate/tutorials/fates/slides.html
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- For more advanced users and if you are willing to develop the FATES model, use the Galaxy Climate JupyterLab where you can develop new features, set up simple test simulations and visualize your results.
- The Galaxy FATES tool can then be used to run operational and long simulations.


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- Simply by setting video to true to the metadata, slides with sufficiently good speaker notes can be automatically turned into videos.
- The slides have audio narration spoken from the script of the speaker notes by AWS Polly.
- The audio clips, and slides are combined into a video which is then available in the GTN Video Library

1 change: 1 addition & 0 deletions topics/epigenetics/tutorials/atac-seq/slides.html
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- The different filtering steps.
- The peak calling.
- The different visualisations.

1 change: 1 addition & 0 deletions topics/genome-annotation/tutorials/apollo/slides.html
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???

- You can now follow the Apollo tutorial to learn how to use it in real life.

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- We first prepare the sequencing reads, checking quality and trimming adapters.
- We then use the MAGeCK toolkit to analyse, followed by visualising results using volcano plots and identifying pathways.


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