add WF tests for scrna basic pipeline

topics/single-cell/tutorials/scrna-case_basic-pipeline/workflows/CS3_Filter,-Plot-and-Explore-Single-cell-RNA-seq-Data-tests.yml

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+- doc: Test outline for CS3_Filter,-Plot-and-Explore-Single-cell-RNA-seq-Data
+  job:
+    Mito-counted AnnData:
+      class: File
+      path: https://zenodo.org/record/7053673/files/Mito-counted_AnnData
+      filetype: h5ad
+  outputs:
+    obs (Step 2):
+      path: test-data/obs (Step 2).tabular
+    Genes-filtered Object:
+      path: test-data/Genes-filtered Object.h5ad
+    Scatter - genes x UMIs:
+      path: test-data/Scatter - genes x UMIs.png
+    Scatter - mito x genes:
+      path: test-data/Scatter - mito x genes.png
+    Violin - genotype - log:
+      path: test-data/Violin - genotype - log.png
+    Violin - batch - log:
+      path: test-data/Violin - batch - log.png
+    var (Step 8):
+      path: test-data/var (Step 8).tabular
+    general (Step 10):
+      path: test-data/general (Step 10).txt
+    Violin - Filterbygenes:
+      path: test-data/Violin - Filterbygenes.png
+    General - Filterbygenes:
+      path: test-data/General - Filterbygenes.txt
+    Mito-filtered Object:
+      path: test-data/Mito-filtered Object.h5ad
+    General - Filterbymito:
+      path: test-data/General - Filterbymito.txt
+    Violin - Filterbymito:
+      path: test-data/Violin - Filterbymito.png
+    output_h5ad (Step 22):
+      path: test-data/output_h5ad (Step 22).h5ad
+    output_h5ad (Step 24):
+      path: test-data/output_h5ad (Step 24).h5ad
+    PCA Variance:
+      path: test-data/PCA Variance.png
+    output_h5ad (Step 28):
+      path: test-data/output_h5ad (Step 28).h5ad
+    output_embed (Step 28):
+      path: test-data/output_embed (Step 28).tabular
+    output_txt (Step 30):
+      path: test-data/output_txt (Step 30).tsv
+    output_h5ad (Step 30):
+      path: test-data/output_h5ad (Step 30).h5ad
+    Markers - genotype:
+      path: test-data/Markers - genotype.tabular
+    output_png (Step 34):
+      path: test-data/output_png (Step 34).png
+    output_png (Step 36):
+      path: test-data/output_png (Step 36).png
+    output_h5ad (Step 38):
+      path: test-data/output_h5ad (Step 38).h5ad
+    out_file1 (Step 40):
+      path: test-data/out_file1 (Step 40).tabular
+    Markers - cluster - named:
+      path: test-data/Markers - cluster - named.tabular
+    output_png (Step 44):
+      path: test-data/output_png (Step 44).png
+    Scatter - mito x UMIs:
+      path: test-data/Scatter - mito x UMIs.png
+    Violin - sex - log:
+      path: test-data/Violin - sex - log.png
+    Counts-filtered Object:
+      path: test-data/Counts-filtered Object.h5ad
+    General - Filterbycounts:
+      path: test-data/General - Filterbycounts.txt
+    Violin - Filterbycounts:
+      path: test-data/Violin - Filterbycounts.png
+    Filtered Object:
+      path: test-data/Filtered Object.h5ad
+    General - Filtered object:
+      path: test-data/General - Filtered object.txt
+    output_h5ad (Step 23):
+      path: test-data/output_h5ad (Step 23).h5ad
+    output_h5ad (Step 25):
+      path: test-data/output_h5ad (Step 25).h5ad
+    output_h5ad (Step 27):
+      path: test-data/output_h5ad (Step 27).h5ad
+    output_embed (Step 29):
+      path: test-data/output_embed (Step 29).tabular
+    output_h5ad (Step 29):
+      path: test-data/output_h5ad (Step 29).h5ad
+    Markers - cluster:
+      path: test-data/Markers - cluster.tabular
+    Final object:
+      path: test-data/Final object.h5ad
+    output_png (Step 33):
+      path: test-data/output_png (Step 33).png
+    anndata (Step 35):
+      path: test-data/anndata (Step 35).h5ad
+    var (Step 37):
+      path: test-data/var (Step 37).tabular
+    out_file1 (Step 39):
+      path: test-data/out_file1 (Step 39).tabular
+    Final cell annotated object:
+      path: test-data/Final cell annotated object.h5ad
+    Markers - genotype - named:
+      path: test-data/Markers - genotype - named.tabular