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fix non-semantic list
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hexylena committed Jun 25, 2024
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34 changes: 17 additions & 17 deletions topics/fair/tutorials/fair-ena/tutorial.md
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Expand Up @@ -232,24 +232,24 @@ First, we need to confirm that your read files are in the correct format. Refer

> <hands-on-title>Linux or OSX</hands-on-title>
> #### On a Linux-based operating system
> **Step 1**:
> Compress the fastq files for the upload using gzip.
> 1. Compress the fastq files for the upload using gzip.
>
> Open the terminal on your machine then type the commands below. First move to the directory where fastq files are located, then compress the fastq files using gzip command.
> ```
> # In the command below replace '/path/to/fastq/directory' with the correct path
> cd /path/to/fastq/directory
>
> gzip *.fastq
> ```
> **Step 2**:
> To enable verification of the integrity of the uploaded fastq file, ENA requires md5 checksum for each file.
>
> Type the command below to calculate and print md5 sums to tab-separated file (for easy cut-and-paste later).
> ```
> for f in *.gz; do md5 $f | awk '{ gsub(/\(|\)/,""); print $2"\t" $4 }'; done > md5sums.tsv
> ```
> md5sums.tsv will contain a tab-separated table of fastq.gz filenames and their md5sum.
> Open the terminal on your machine then type the commands below. First move to the directory where fastq files are located, then compress the fastq files using gzip command.
>
> ```
> # In the command below replace '/path/to/fastq/directory' with the correct path
> cd /path/to/fastq/directory
>
> gzip *.fastq
> ```
>
> 2. To enable verification of the integrity of the uploaded fastq file, ENA requires md5 checksum for each file.
>
> Type the command below to calculate and print md5 sums to tab-separated file (for easy cut-and-paste later).
> ```
> for f in *.gz; do md5 $f | awk '{ gsub(/\(|\)/,""); print $2"\t" $4 }'; done > md5sums.tsv
> ```
> md5sums.tsv will contain a tab-separated table of fastq.gz filenames and their md5sum.
>
{: .hands_on}
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