Update clustering 3k PBMCs tutorial with latest scanpy and anndata #2433
pavanvidemAnnotations
3 errors and 1 warning
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lint:
topics/single-cell/tutorials/scrna-scanpy-pbmc3k/workflows/Clustering-3k-PBMC-with-Scanpy.ga#L1
[rdjsonl] reported by reviewdog 🐶
Please use the extension -test.yml for this test file.
Raw Output:
{"message":"Please use the extension -test.yml for this test file.","location":{"path":"./topics/single-cell/tutorials/scrna-scanpy-pbmc3k/workflows/Clustering-3k-PBMC-with-Scanpy.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:032","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn032"}}
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lint:
topics/single-cell/tutorials/scrna-scanpy-pbmc3k/workflows/Clustering-3k-PBMC-with-Scanpy.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow is missing a license. Please select a valid OSI license. You can correct this in the Galaxy workflow editor.
Raw Output:
{"message":"This workflow is missing a license. Please select a valid OSI license. You can correct this in the Galaxy workflow editor.","location":{"path":"./topics/single-cell/tutorials/scrna-scanpy-pbmc3k/workflows/Clustering-3k-PBMC-with-Scanpy.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:026","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn026"}}
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lint
Process completed with exit code 1.
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lint
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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