[] reported by reviewdog 🐶 Potential broken box. A None was opened on 343, but not closed on line 344 Raw Output: topics/assembly/tutorials/vgp_workflow_training/tutorial.md:344: Potential broken box. A None was opened on 343, but not closed on line 344

[rdjsonl] reported by reviewdog 🐶 This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html). Raw Output: {"message":"This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).","location":{"path":"./topics/assembly/tutorials/vgp_workflow_training/workflows/wf1-kmer-profiling-hifi.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:027","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn027"}}

[rdjsonl] reported by reviewdog 🐶 This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html). Raw Output: {"message":"This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).","location":{"path":"./topics/assembly/tutorials/vgp_workflow_training/workflows/wf4-assembly-Hifi-HiC-phasing.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:027","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn027"}}

[rdjsonl] reported by reviewdog 🐶 This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html). Raw Output: {"message":"This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).","location":{"path":"./topics/assembly/tutorials/vgp_workflow_training/workflows/wf6-purge-duplicate-contigs.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:027","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn027"}}

[rdjsonl] reported by reviewdog 🐶 This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html). Raw Output: {"message":"This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).","location":{"path":"./topics/assembly/tutorials/vgp_workflow_training/workflows/wf8-scaffolding-HiC.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:027","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn027"}}

[rdjsonl] reported by reviewdog 🐶 Missing both a DOI and a URL. Please add one of the two. Raw Output: {"message":"Missing both a DOI and a URL. Please add one of the two.","location":{"path":"./topics/assembly/tutorials/vgp_workflow_training/tutorial.bib","range":{"start":{"line":250,"column":1},"end":{"line":250,"column":21}}},"severity":"ERROR","code":{"value":"GTN:012","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn012"}}

[rdjsonl] reported by reviewdog 🐶 Please use the link function to link to other pages within the GTN. It helps us ensure that all links are correct Raw Output: {"message":"Please use the link function to link to other pages within the GTN. It helps us ensure that all links are correct","location":{"path":"./topics/assembly/tutorials/vgp_workflow_training/tutorial.md","range":{"start":{"line":68,"column":37},"end":{"line":68,"column":109}}},"severity":"ERROR","code":{"value":"GTN:003","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn003"},"suggestions":[{"text":"{% link .md %}","range":{"start":{"line":68,"column":37},"end":{"line":68,"column":109}}}]}

reviewdog: Too many results (annotations) in diff. You may miss some annotations due to GitHub limitation for annotation created by logging command. Please check GitHub Actions log console to see all results. Limitation: - 10 warning annotations and 10 error annotations per step - 50 annotations per job (sum of annotations from all the steps) - 50 annotations per run (separate from the job annotations, these annotations aren't created by users) Source: https://github.community/t5/GitHub-Actions/Maximum-number-of-annotations-that-can-be-created-using-GitHub/m-p/39085

[rdjsonl] reported by reviewdog 🐶 You have skipped a heading level, please correct this. <details><summary>Listing of Heading Levels</summary> ``` #### Step-by-step #### Everything together ``` </details> Raw Output: {"message":"You have skipped a heading level, please correct this.\n<details><summary>Listing of Heading Levels</summary>\n\n```\n#### Step-by-step\n#### Everything together\n```\n</details>","location":{"path":"./faqs/galaxy/collections_build_list.md","range":{"start":{"line":9,"column":1},"end":{"line":9,"column":5}}},"severity":"ERROR","code":{"value":"GTN:028","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn028"},"suggestions":[{"text":"##","range":{"start":{"line":9,"column":1},"end":{"line":9,"column":5}}}]}

Process completed with exit code 1.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

[rdjsonl] reported by reviewdog 🐶 Instead of embedding IFrames to YouTube contents, consider adding this video to the [GTN Video Library](https://github.com/gallantries/video-library/issues/) where it will be more visible for others. Raw Output: {"message":"Instead of embedding IFrames to YouTube contents, consider adding this video to the [GTN Video Library](https://github.com/gallantries/video-library/issues/) where it will be more visible for others.","location":{"path":"./topics/assembly/tutorials/vgp_workflow_training/tutorial.md","range":{"start":{"line":342,"column":19},"end":{"line":342,"column":298}}},"severity":"WARNING","code":{"value":"GTN:002","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn002"},"suggestions":[{"text":"","range":{"start":{"line":342,"column":19},"end":{"line":342,"column":298}}}]}

[rdjsonl] reported by reviewdog 🐶 This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is. Raw Output: {"message":"This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":409,"column":3},"end":{"line":409,"column":20}}},"severity":"WARNING","code":{"value":"GTN:020","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn020"},"suggestions":[{"text":"### Gene Summary file","range":{"start":{"line":409,"column":3},"end":{"line":409,"column":20}}}]}

[rdjsonl] reported by reviewdog 🐶 This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is. Raw Output: {"message":"This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":433,"column":3},"end":{"line":433,"column":21}}},"severity":"WARNING","code":{"value":"GTN:020","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn020"},"suggestions":[{"text":"### sgRNA summary file","range":{"start":{"line":433,"column":3},"end":{"line":433,"column":21}}}]}

[rdjsonl] reported by reviewdog 🐶 This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is. Raw Output: {"message":"This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":456,"column":3},"end":{"line":456,"column":13}}},"severity":"WARNING","code":{"value":"GTN:020","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn020"},"suggestions":[{"text":"### PDF report","range":{"start":{"line":456,"column":3},"end":{"line":456,"column":13}}}]}

[rdjsonl] reported by reviewdog 🐶 Instead of embedding IFrames to YouTube contents, consider adding this video to the [GTN Video Library](https://github.com/gallantries/video-library/issues/) where it will be more visible for others. Raw Output: {"message":"Instead of embedding IFrames to YouTube contents, consider adding this video to the [GTN Video Library](https://github.com/gallantries/video-library/issues/) where it will be more visible for others.","location":{"path":"./faqs/galaxy/workflows_import_from_dockstore.md","range":{"start":{"line":15,"column":19},"end":{"line":15,"column":298}}},"severity":"WARNING","code":{"value":"GTN:002","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn002"},"suggestions":[{"text":"","range":{"start":{"line":15,"column":19},"end":{"line":15,"column":298}}}]}

[rdjsonl] reported by reviewdog 🐶 Instead of embedding IFrames to YouTube contents, consider adding this video to the [GTN Video Library](https://github.com/gallantries/video-library/issues/) where it will be more visible for others. Raw Output: {"message":"Instead of embedding IFrames to YouTube contents, consider adding this video to the [GTN Video Library](https://github.com/gallantries/video-library/issues/) where it will be more visible for others.","location":{"path":"./faqs/galaxy/workflows_import_from_github.md","range":{"start":{"line":15,"column":19},"end":{"line":15,"column":298}}},"severity":"WARNING","code":{"value":"GTN:002","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn002"},"suggestions":[{"text":"","range":{"start":{"line":15,"column":19},"end":{"line":15,"column":298}}}]}