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afgane committed Nov 26, 2024
1 parent a5ef109 commit 66293c0
Showing 1 changed file with 30 additions and 30 deletions.
60 changes: 30 additions & 30 deletions tools.yml
Original file line number Diff line number Diff line change
Expand Up @@ -1118,12 +1118,30 @@ tools:
toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/.*:
cores: 16
mem: 61.4
toolshed.g2.bx.psu.edu/repos/goeckslab/mesmer/mesmer/.*:
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mem: 478
toolshed.g2.bx.psu.edu/repos/goeckslab/rename_tiff_channels/rename_tiff_channels/.*:
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toolshed.g2.bx.psu.edu/repos/goeckslab/scimap_mcmicro_to_anndata/scimap_mcmicro_to_anndata/.*:
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mem: 16
toolshed.g2.bx.psu.edu/repos/goeckslab/scimap_phenotyping/scimap_phenotyping/.*:
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mem: 16
toolshed.g2.bx.psu.edu/repos/goeckslab/vitessce_spatial/vitessce_spatial/.*:
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toolshed.g2.bx.psu.edu/repos/guerler/charts/charts/.*:
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toolshed.g2.bx.psu.edu/repos/hammock/hammock/hammock_1.0/.*:
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env:
_JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
toolshed.g2.bx.psu.edu/repos/imgteam/bfconvert/ip_convertimage/.*:
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mem: 128
toolshed.g2.bx.psu.edu/repos/imgteam/projective_transformation/ip_projective_transformation/.*:
mem: 24
toolshed.g2.bx.psu.edu/repos/imgteam/scale_image/scale_image/.*:
Expand Down Expand Up @@ -2578,6 +2596,18 @@ tools:
mem: 330
toolshed.g2.bx.psu.edu/repos/pavlo-lutsik/rnbeads/rnbeads/.*:
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toolshed.g2.bx.psu.edu/repos/perssond/ashlar/ashlar/.*:
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mem: 128
toolshed.g2.bx.psu.edu/repos/perssond/basic_illumination/basic_illumination/.*:
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mem: 64
toolshed.g2.bx.psu.edu/repos/perssond/coreograph/unet_coreograph/.*:
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mem: 64
toolshed.g2.bx.psu.edu/repos/perssond/quantification/quantification/.*:
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mem: 64
toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/blast2go/.*:
mem: 20
toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler/mira_assembler/.*:
Expand Down Expand Up @@ -2681,36 +2711,6 @@ tools:
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toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varcall/.*:
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toolshed.g2.bx.psu.edu/repos/perssond/ashlar/ashlar/.*:
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toolshed.g2.bx.psu.edu/repos/perssond/coreograph/unet_coreograph/.*:
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mem: 64
toolshed.g2.bx.psu.edu/repos/goeckslab/mesmer/mesmer/.*:
cores: 24
mem: 478
toolshed.g2.bx.psu.edu/repos/imgteam/bfconvert/ip_convertimage/.*:
cores: 12
mem: 128
toolshed.g2.bx.psu.edu/repos/perssond/quantification/quantification/.*:
cores: 8
mem: 64
toolshed.g2.bx.psu.edu/repos/goeckslab/rename_tiff_channels/rename_tiff_channels/.*:
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toolshed.g2.bx.psu.edu/repos/goeckslab/scimap_mcmicro_to_anndata/scimap_mcmicro_to_anndata/.*:
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toolshed.g2.bx.psu.edu/repos/goeckslab/scimap_phenotyping/scimap_phenotyping/.*:
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mem: 16
toolshed.g2.bx.psu.edu/repos/goeckslab/vitessce_spatial/vitessce_spatial/.*:
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mem: 64
.*bowtie2_index_builder_data_manager.*:
cores: 16
.*bwa_mem_index_builder_data_manager.*:
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