Fix ci_find_repos command to not filter repos whose only modifications where in subdirs #688
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E.g. in the Travis job:
https://travis-ci.org/galaxyproject/tools-iuc/jobs/240866693
for the pull request:
galaxyproject/tools-iuc#1349
changed_repositories.list should also have contained the repo
data_managers/data_manager_bowtie_index_builder
.